Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   UE46_RS13035 Genome accession   NZ_CP011102
Coordinates   2689954..2691765 (-) Length   603 a.a.
NCBI ID   WP_036059430.1    Uniprot ID   -
Organism   Listeria weihenstephanensis strain WS 4560     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2684954..2696765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UE46_RS13000 (UE46_12950) - 2684978..2685361 (+) 384 WP_036059435.1 VOC family protein -
  UE46_RS13005 (UE46_12955) - 2685434..2685733 (+) 300 WP_036059434.1 MGMT family protein -
  UE46_RS13010 (UE46_12960) - 2685730..2686227 (-) 498 WP_233230932.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  UE46_RS13015 (UE46_12965) - 2686202..2686810 (-) 609 WP_036059458.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  UE46_RS13020 (UE46_12970) - 2686988..2688358 (+) 1371 WP_036059433.1 Nramp family divalent metal transporter -
  UE46_RS13025 (UE46_12975) - 2688436..2688852 (-) 417 WP_036059432.1 HTH domain-containing protein -
  UE46_RS13030 (UE46_12980) - 2688942..2689445 (+) 504 WP_036059431.1 hypothetical protein -
  UE46_RS13035 (UE46_12985) pepF 2689954..2691765 (-) 1812 WP_036059430.1 oligoendopeptidase F Regulator
  UE46_RS13040 (UE46_12990) - 2691832..2692944 (-) 1113 WP_118907689.1 competence protein CoiA family protein -
  UE46_RS13045 (UE46_12995) mecA 2693081..2693734 (-) 654 WP_036059429.1 adaptor protein MecA -
  UE46_RS13050 (UE46_13000) spxA 2694031..2694426 (-) 396 WP_036059428.1 transcriptional regulator SpxA -
  UE46_RS13055 (UE46_13005) - 2694766..2695737 (-) 972 WP_036059423.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68517.05 Da        Isoelectric Point: 4.6184

>NTDB_id=142258 UE46_RS13035 WP_036059430.1 2689954..2691765(-) (pepF) [Listeria weihenstephanensis strain WS 4560]
MSEKKVAALPAREEVPVELTWDLTTIFKSDDAWEASFVALKEEVKEAQAFQGKLGESSDMLLQAMRYRDELYDRLGNLYV
YAHLKQDQDTTNTTYQGLYSRAGSLLTEASAAISYFEPEILAIDEAKLKGFIAENADLRLYAHLLEEVNLNRPFVLSEKE
EALLAQAGEVLGNASRTYSILNNADMKFPEIEDENGNMVEITHGRYGKMMEGKNRDVRKAAFKGMYGAYEGLKNTIATTL
TGQVKKGNFYAKVHGFESARHAALFGNHIPEAVYDSLLEAVNDQLSLLQRYVGLRKQLLGLDELRMYDMYTPLSTDVHLA
FTYDEAKDIVLNGLAPLGEEYQGILKEAFESRWIDVVENKGKRSGAYSSGAYSTSPYILMNWQDTIDNVFTLAHELGHSV
HSYYTRENQPFVYGDYPIFLAEVASTTNENLLTDYMLKKYDDPKVRAYLLNHYLDGFKGTVFRQTQFAEFEHFIYQADQK
GEALTAEFLTENYFAINEKYYGSEIVYDEEIGLEWSRIPHFYMNYYVFQYATGFSAASALSDRILHGSAEDIEHYLAFLK
AGSSDFPIEVLKKAGVDMTTSKPVTDALKVFEQRLNELEELVK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=142258 UE46_RS13035 WP_036059430.1 2689954..2691765(-) (pepF) [Listeria weihenstephanensis strain WS 4560]
ATGAGTGAGAAAAAAGTAGCCGCACTACCAGCACGTGAAGAAGTGCCCGTAGAACTAACATGGGACTTAACGACAATTTT
TAAAAGTGATGATGCGTGGGAAGCATCTTTTGTAGCATTAAAGGAAGAAGTGAAGGAGGCGCAGGCATTTCAAGGAAAGC
TGGGCGAGAGTAGCGATATGTTGTTGCAAGCAATGCGCTATCGTGATGAGCTCTATGATCGTTTAGGGAACTTGTATGTC
TATGCTCATTTGAAACAGGATCAGGATACGACGAATACGACATATCAGGGATTGTATAGTCGTGCTGGTAGTTTATTGAC
GGAAGCTTCGGCTGCTATTTCTTATTTTGAACCAGAGATTTTAGCGATAGATGAGGCGAAATTGAAAGGCTTTATCGCGG
AGAATGCTGATTTACGATTGTATGCGCATTTGTTGGAAGAAGTGAACTTGAACCGTCCGTTTGTTTTGTCGGAGAAGGAA
GAAGCTTTATTGGCGCAGGCTGGGGAAGTTTTGGGAAATGCTTCGCGAACGTATAGTATTTTAAATAATGCGGATATGAA
GTTTCCTGAGATCGAGGACGAGAATGGGAATATGGTGGAAATTACGCATGGTCGTTATGGAAAAATGATGGAAGGTAAGA
ATCGGGATGTTCGTAAGGCGGCATTTAAAGGTATGTATGGTGCTTATGAGGGCTTGAAGAATACAATCGCTACGACGCTA
ACGGGGCAAGTGAAGAAGGGAAATTTTTATGCGAAGGTTCATGGGTTTGAATCGGCGCGACATGCGGCTTTGTTTGGCAA
TCATATTCCAGAGGCTGTGTATGACTCGTTGTTGGAGGCTGTGAACGATCAGTTGTCGTTGCTACAGCGTTATGTGGGTC
TTCGCAAGCAGTTGCTTGGATTGGATGAATTGCGGATGTATGATATGTATACGCCGCTCTCAACGGATGTACATTTGGCG
TTCACGTATGACGAAGCGAAAGATATTGTTTTGAATGGACTAGCGCCTTTGGGGGAAGAATACCAGGGGATTTTGAAGGA
AGCATTTGAGAGTCGTTGGATTGATGTTGTTGAAAATAAAGGGAAACGTAGTGGTGCTTATTCATCGGGTGCTTATAGTA
CGAGTCCGTATATCTTGATGAATTGGCAGGATACGATTGATAATGTGTTTACGCTGGCGCATGAGTTAGGTCATAGTGTG
CATAGTTACTATACGCGTGAAAATCAGCCATTTGTGTATGGGGACTATCCGATTTTCTTGGCAGAGGTTGCTTCGACGAC
GAATGAGAACTTGTTGACGGATTATATGTTGAAGAAATATGATGATCCAAAAGTGCGTGCCTATTTGCTGAATCATTATT
TGGACGGTTTTAAAGGAACGGTATTCCGTCAAACGCAATTTGCTGAGTTTGAGCATTTTATTTATCAGGCGGATCAGAAG
GGTGAGGCGTTAACGGCTGAATTCTTAACGGAGAATTATTTTGCTATCAATGAGAAGTATTATGGCAGTGAGATTGTATA
TGATGAGGAGATCGGGCTGGAATGGTCGCGGATTCCGCATTTCTATATGAATTATTATGTGTTCCAATATGCGACAGGAT
TCAGTGCGGCATCAGCGCTTAGTGATCGGATTTTACATGGTAGTGCAGAAGACATTGAGCATTATTTGGCATTTTTAAAA
GCTGGAAGTTCTGATTTTCCAATTGAGGTGTTGAAAAAAGCTGGGGTGGATATGACTACGTCTAAACCCGTGACGGATGC
GTTGAAAGTTTTTGAGCAGCGTTTGAATGAGCTGGAAGAATTGGTGAAGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(209-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.561

98.176

0.536

Multiple sequence alignment