Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   UE46_RS08545 Genome accession   NZ_CP011102
Coordinates   1764465..1766156 (-) Length   563 a.a.
NCBI ID   WP_036062359.1    Uniprot ID   A0A1S7FUL5
Organism   Listeria weihenstephanensis strain WS 4560     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759465..1771156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UE46_RS08525 (UE46_08495) - 1759797..1760789 (-) 993 WP_036062355.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  UE46_RS08530 (UE46_08500) lpdA 1760812..1762236 (-) 1425 WP_036062356.1 dihydrolipoyl dehydrogenase -
  UE46_RS08535 (UE46_08505) buk 1762240..1763313 (-) 1074 WP_118907547.1 butyrate kinase -
  UE46_RS08540 (UE46_08510) - 1763440..1764312 (-) 873 WP_036062358.1 phosphate acyltransferase -
  UE46_RS08545 (UE46_08515) recN 1764465..1766156 (-) 1692 WP_036062359.1 DNA repair protein RecN Machinery gene
  UE46_RS08550 (UE46_08520) ahrC 1766174..1766623 (-) 450 WP_036062360.1 transcriptional regulator AhrC/ArgR -
  UE46_RS08555 (UE46_08525) - 1766819..1767634 (-) 816 WP_118907548.1 TlyA family RNA methyltransferase -
  UE46_RS08560 (UE46_08530) dxs 1767637..1769529 (-) 1893 WP_118907820.1 1-deoxy-D-xylulose-5-phosphate synthase -
  UE46_RS08565 (UE46_08535) - 1769797..1770678 (-) 882 WP_036062361.1 polyprenyl synthetase family protein -
  UE46_RS08570 (UE46_08540) xseB 1770675..1770908 (-) 234 WP_036062363.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63422.18 Da        Isoelectric Point: 4.8803

>NTDB_id=142251 UE46_RS08545 WP_036062359.1 1764465..1766156(-) (recN) [Listeria weihenstephanensis strain WS 4560]
MLQELTIRNFAIIESLNLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSVDFIRHGEEKLEIQGLFTINPQNKGCLEA
LENNGIDASDGMVVLERILFQSGKNACRINGKLATTVVLREIGSRLIDIHSQHEHQELMNDEFHLQLLDRFAWKDIESTL
AKYQAKYAEYMEMKTKWRNWTKNEQELAQRLDMLRFQQDEITSSNLRLGEEETLVEQKHVLSNFEKINESLQSAYTALQG
EERGLEFISEAMRHVESASDILPEYKALSESVASSFYLLEDSAMQIRQELDKLEFQPDELDTIETRLNELSQLKRKYGKT
VEAIIQYNEEIDQEILELSDRETHLGHLEKDLEVAKEQLSELAGKITAIRQKSAKLLEKQIKNELNQLYMEKAIFQVNFA
TEAKEFTENGVDKVAFYMSTNPGEPLKPLSKVASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVAQAIAEKIY
AVAIGSQVLCISHLPQVAAMADHHFYISKATTANRTMTSVVALSGEQKIEEISRMIAGIEVTDVTKQHASEMLTQANKIK
AQK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=142251 UE46_RS08545 WP_036062359.1 1764465..1766156(-) (recN) [Listeria weihenstephanensis strain WS 4560]
TTGCTACAAGAACTAACGATTAGAAATTTTGCTATCATCGAATCTTTAAATCTATCTTTTCAAGAAGGTATGACTGTTTT
AACAGGGGAGACTGGCGCGGGAAAGTCAATTATTATTGATGCGCTCGGTCTTCTTGTTGGTGGCAGAGGTTCTGTTGATT
TTATTAGACATGGAGAAGAGAAGCTTGAAATCCAAGGGCTGTTCACAATCAACCCGCAAAATAAAGGTTGTTTAGAGGCG
CTTGAAAATAATGGTATTGATGCAAGCGACGGTATGGTAGTCCTTGAGAGAATTCTGTTCCAAAGTGGTAAAAATGCTTG
CCGTATCAATGGGAAACTCGCGACGACCGTTGTGCTACGCGAAATTGGTTCCCGTTTGATCGACATTCACAGCCAACACG
AACATCAAGAGTTAATGAATGATGAGTTCCATTTGCAGCTACTTGACCGCTTTGCGTGGAAGGATATTGAATCCACACTA
GCCAAGTACCAAGCGAAATACGCCGAATATATGGAAATGAAAACAAAATGGCGTAATTGGACAAAAAATGAACAAGAACT
TGCGCAACGCCTAGATATGCTTCGTTTTCAGCAAGACGAAATTACGAGTTCCAATCTGCGGTTAGGCGAGGAAGAAACTT
TGGTGGAGCAAAAACATGTGCTTTCCAATTTCGAGAAAATTAATGAAAGTTTGCAAAGTGCTTATACGGCGCTTCAAGGC
GAAGAGCGTGGCCTCGAATTTATTTCTGAGGCGATGCGACATGTGGAGTCTGCGAGTGATATCTTGCCAGAATATAAAGC
ACTGAGTGAATCGGTGGCTTCGAGTTTTTATTTATTGGAAGATAGTGCGATGCAAATTCGGCAAGAGCTAGATAAACTAG
AGTTTCAACCAGACGAGCTGGACACGATTGAAACGCGCCTGAATGAACTGAGCCAGTTGAAGCGCAAATATGGTAAAACA
GTTGAAGCCATTATCCAATACAACGAAGAAATAGATCAAGAAATCCTAGAATTATCCGACCGGGAAACGCATCTAGGTCA
TTTGGAAAAAGATTTGGAAGTTGCGAAAGAACAGCTTTCTGAACTTGCTGGAAAAATCACAGCAATCCGCCAAAAATCAG
CAAAATTACTCGAAAAACAAATTAAAAACGAATTAAATCAGCTATATATGGAAAAAGCGATTTTCCAAGTGAATTTCGCG
ACAGAAGCAAAAGAATTTACTGAAAACGGTGTTGATAAAGTCGCATTTTATATGAGTACAAATCCAGGTGAACCGCTGAA
ACCGTTGTCCAAAGTAGCTTCTGGCGGTGAGTTGTCGCGGATGATGCTGGCGCTCAAAACAATTTTTTCACGACATCAGG
GCATTACATCGATTATTTTTGATGAGGTGGATACGGGTGTCAGTGGCCGGGTAGCCCAAGCAATTGCTGAAAAAATTTAT
GCGGTGGCGATTGGTTCTCAGGTACTCTGTATTTCGCATTTACCTCAAGTAGCTGCCATGGCAGACCACCATTTCTACAT
TTCTAAAGCAACAACTGCGAATCGCACGATGACATCTGTCGTAGCCTTGTCTGGGGAACAAAAAATTGAAGAAATCAGTC
GGATGATTGCGGGCATTGAAGTGACGGATGTGACAAAACAACATGCTAGTGAAATGCTGACACAAGCCAACAAGATTAAA
GCACAGAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S7FUL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.419

100

0.558

Multiple sequence alignment