Detailed information NTG0142248

Bioinformatically predicted

Overview

• Name: sbcE
• Type: Machinery gene
• Locus tag: AVM03_RS18675
• Genome accession: NZ_CP013727
• Coordinates: 3855709..3858591 (+)
• Length: 960 a.a.
• NCBI ID: WP_003155252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3850709..3863591

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS18650 (AVM03_18645)	-	3851147..3851914 (+)	768	WP_044053066.1	enoyl-CoA hydratase	-
AVM03_RS18655 (AVM03_18650)	-	3851939..3852124 (-)	186	WP_003155259.1	YhzD family protein	-
AVM03_RS18660 (AVM03_18655)	-	3852230..3853126 (+)	897	WP_003155257.1	ABC transporter ATP-binding protein	-
AVM03_RS18665 (AVM03_18660)	-	3853119..3854378 (+)	1260	WP_014304724.1	ABC transporter permease	-
AVM03_RS18670 (AVM03_18665)	-	3854489..3855712 (+)	1224	WP_058906676.1	metallophosphoesterase family protein	-
AVM03_RS18675 (AVM03_18670)	sbcE	3855709..3858591 (+)	2883	WP_003155252.1	ATP-binding protein	Machinery gene
AVM03_RS18680 (AVM03_18675)	yhaM	3858665..3859609 (+)	945	WP_003155251.1	3'-5' exoribonuclease YhaM	-
AVM03_RS18685 (AVM03_18680)	-	3859724..3859951 (+)	228	WP_003155250.1	sporulation YhaL family protein	-
AVM03_RS18690 (AVM03_18685)	-	3859991..3860842 (-)	852	WP_003155249.1	peptidylprolyl isomerase	-
AVM03_RS19880	yhzE1	3861001..3861087 (+)	87	WP_017417375.1	sporulation protein YhzE1	-
AVM03_RS18695 (AVM03_18690)	yhzE2	3861212..3861298 (+)	87	WP_003155248.1	sporulation protein YhzE2	-
AVM03_RS18700 (AVM03_18695)	-	3861355..3861573 (-)	219	WP_003155245.1	hypothetical protein	-
AVM03_RS18705 (AVM03_18700)	-	3861634..3862164 (-)	531	WP_003155244.1	DUF3267 domain-containing protein	-
AVM03_RS18710 (AVM03_18710)	-	3862376..3862717 (+)	342	WP_003155243.1	YhaI family protein	-
AVM03_RS18715 (AVM03_18715)	-	3862714..3863325 (-)	612	WP_003155240.1	HTH-type transcriptional regulator Hpr	-

Sequence

Protein

• Length: 960 a.a.
• Molecular weight: 109582.65 Da
• Isoelectric Point: 7.7842

>NTDB_id=142248 AVM03_RS18675 WP_003155252.1 3855709..3858591(+) (sbcE) [Bacillus amyloliquefaciens strain MBE1283]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDIAEEIKTVKSAIEA
KPLADKKTALESELSSYPDALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQAELLAPNEDLLQTERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVLSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTAENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGAGHKKKKPTISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKELGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLRVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLDPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREKTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYRKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAASLPFLLDDSFVHFDRQRLERLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide

• Length: 2883 bp

>NTDB_id=142248 AVM03_RS18675 WP_003155252.1 3855709..3858591(+) (sbcE) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAAATAACGGCAATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACAACATTGATGTCCTTCATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGTGCCGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTTTCCGATACAGATCGGGCGCTGTACGAGGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAGCTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGATGCATTGAAGCAATTCCCGAAGGA
CGGGATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCTGCCCGTCTTGAGGGACTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGAGCTGCTCGCTCCAAATGAGGACTTGCTGCAAACAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTTGTCAGGATTGCAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGGCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCAATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAGCCGCTGCCGTCAGAAAGAGGAGG
GGCCGGTCACAAGAAAAAGAAGCCGACGATCTCCAAAGAAGCGGCTGACCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAACTGGGTTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAATAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGTTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCGCGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAATGAAGAAGTTCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAACCGCGAACACTTTTGTGAACTCGCCAGGCTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTTGATCCGTATATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCGCAGCTCCGTGAGAAAACCG
CTTTATTAACGGTGAAACAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATCATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTACCGCAAAT
TGTATTTCTCCGAGGCGGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCAGCAGGCGAACTCTCACAG
GCGGCTTGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGCATCACTTCCATTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGGAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_27) (1-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcE	Bacillus subtilis subsp. subtilis str. 168	56.846	100	0.571