Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AVM03_RS17600 Genome accession   NZ_CP013727
Coordinates   3653277..3653993 (+) Length   238 a.a.
NCBI ID   WP_014304613.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3648277..3658993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS17570 (AVM03_17565) - 3648454..3648831 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  AVM03_RS17575 (AVM03_17570) - 3648841..3649272 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  AVM03_RS17580 (AVM03_17575) - 3649288..3649530 (-) 243 WP_003155595.1 spore germination protein -
  AVM03_RS17585 (AVM03_17580) - 3649545..3649805 (-) 261 WP_007408496.1 spore germination protein -
  AVM03_RS17590 (AVM03_17585) treP 3650077..3651492 (+) 1416 WP_032872301.1 PTS system trehalose-specific EIIBC component -
  AVM03_RS17595 (AVM03_17590) treC 3651568..3653253 (+) 1686 WP_025854004.1 alpha,alpha-phosphotrehalase -
  AVM03_RS17600 (AVM03_17595) treR 3653277..3653993 (+) 717 WP_014304613.1 trehalose operon repressor Regulator
  AVM03_RS17605 (AVM03_17600) - 3654127..3654792 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  AVM03_RS17610 (AVM03_17605) - 3654828..3655589 (-) 762 WP_003155586.1 YibE/F family protein -
  AVM03_RS17615 (AVM03_17610) - 3655586..3656725 (-) 1140 WP_003155584.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27482.53 Da        Isoelectric Point: 7.3803

>NTDB_id=142242 AVM03_RS17600 WP_014304613.1 3653277..3653993(+) (treR) [Bacillus amyloliquefaciens strain MBE1283]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=142242 AVM03_RS17600 WP_014304613.1 3653277..3653993(+) (treR) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42