Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   UE46_RS03380 Genome accession   NZ_CP011102
Coordinates   699817..700767 (+) Length   316 a.a.
NCBI ID   WP_036063093.1    Uniprot ID   -
Organism   Listeria weihenstephanensis strain WS 4560     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 694817..705767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UE46_RS03365 (UE46_03355) ald 696987..698090 (+) 1104 WP_036063095.1 alanine dehydrogenase -
  UE46_RS03370 (UE46_03360) tdcB 698090..699088 (+) 999 WP_118907800.1 bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB -
  UE46_RS03375 (UE46_03365) - 699169..699399 (+) 231 WP_051493066.1 LapA family protein -
  UE46_RS16240 - 699454..699624 (-) 171 WP_159103125.1 hypothetical protein -
  UE46_RS03380 (UE46_03370) ceuB 699817..700767 (+) 951 WP_036063093.1 ABC transporter permease Machinery gene
  UE46_RS03385 (UE46_03375) - 700760..701701 (+) 942 WP_118907392.1 iron chelate uptake ABC transporter family permease subunit -
  UE46_RS03390 (UE46_03380) - 701698..702456 (+) 759 WP_036063088.1 ABC transporter ATP-binding protein -
  UE46_RS03395 (UE46_03385) - 702536..703477 (+) 942 WP_036063086.1 siderophore ABC transporter substrate-binding protein -
  UE46_RS03400 (UE46_03390) - 703634..704185 (-) 552 WP_036063084.1 GNAT family N-acetyltransferase -
  UE46_RS03405 (UE46_03395) - 704305..705108 (+) 804 WP_036063082.1 YwqG family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34946.38 Da        Isoelectric Point: 10.0673

>NTDB_id=142241 UE46_RS03380 WP_036063093.1 699817..700767(+) (ceuB) [Listeria weihenstephanensis strain WS 4560]
MKRAILIVVFIILAVLSVFVGVHKISILHIFSLTQEQWDIIWISRIPRLISIILAGAGISICGMIMQSLTQNKFVSPTTA
GTMDAARLGILVSLLIFTTASPLVKMGVAFLFALLGTFIFMQILERIPFKDTIFIPLVGLMFGGILSSITTFFAYKFDLI
QNISSWLQGDFSMVLKGRYELLYIAVPLIIIAYVYANQFTVAGMGETFSRNLGLSYKAIMRIGLVIVAFITASVVLTVGM
IPFLGLIVPNIVSIYRGDNIKKTLFDTAVFGATFLLFCDVLGRVIIYPYEISISLMVGIIGSAIFIYLLMRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=142241 UE46_RS03380 WP_036063093.1 699817..700767(+) (ceuB) [Listeria weihenstephanensis strain WS 4560]
TTGAAGAGAGCGATACTTATTGTTGTTTTTATCATTCTGGCGGTGCTTTCGGTTTTTGTCGGGGTACATAAGATTTCGAT
CCTACATATTTTTTCTTTGACGCAAGAACAGTGGGATATTATTTGGATAAGTCGGATTCCTAGATTGATTAGCATTATTC
TGGCAGGTGCTGGAATCAGTATTTGTGGGATGATTATGCAAAGTTTAACACAGAATAAATTCGTTTCACCGACAACGGCT
GGGACGATGGATGCGGCTAGACTCGGAATTTTGGTATCATTACTTATTTTTACAACGGCAAGTCCACTCGTTAAAATGGG
CGTGGCATTCTTATTTGCGCTATTGGGAACGTTTATTTTCATGCAAATATTGGAACGAATTCCATTTAAGGATACGATAT
TTATTCCACTTGTTGGCTTGATGTTTGGTGGGATACTTAGTTCCATTACGACATTTTTTGCATACAAGTTTGACTTGATA
CAAAATATTTCTTCGTGGTTACAGGGTGATTTTTCGATGGTGTTAAAAGGGCGTTATGAGCTGTTATATATCGCGGTGCC
GTTGATTATCATTGCTTATGTATACGCGAATCAGTTTACGGTGGCTGGTATGGGCGAGACGTTTTCGCGGAATTTAGGGC
TTTCTTATAAGGCGATCATGCGTATTGGCCTGGTGATTGTGGCTTTTATTACAGCATCGGTTGTGCTTACAGTCGGAATG
ATCCCTTTTCTTGGTTTAATTGTACCGAACATTGTGTCGATTTATCGCGGGGATAATATTAAGAAAACGTTATTTGATAC
GGCAGTTTTCGGCGCGACGTTCTTGCTGTTTTGTGATGTGCTTGGCCGCGTGATAATTTATCCGTATGAAATTTCGATTA
GTTTGATGGTCGGCATTATTGGCAGCGCGATTTTTATTTATCTGCTGATGAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.808

98.734

0.541

Multiple sequence alignment