Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AVM03_RS16585 Genome accession   NZ_CP013727
Coordinates   3429995..3430630 (+) Length   211 a.a.
NCBI ID   WP_058906596.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3424995..3435630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS16550 (AVM03_16540) - 3425268..3425846 (+) 579 WP_094247202.1 TetR/AcrR family transcriptional regulator -
  AVM03_RS20800 - 3425940..3426026 (-) 87 Protein_3318 hypothetical protein -
  AVM03_RS16555 (AVM03_16545) - 3426059..3426358 (-) 300 WP_003156074.1 spore coat protein -
  AVM03_RS16560 (AVM03_16550) - 3426373..3426570 (-) 198 WP_003156073.1 hypothetical protein -
  AVM03_RS16565 (AVM03_16555) - 3426589..3427725 (-) 1137 WP_003156072.1 zinc-dependent alcohol dehydrogenase -
  AVM03_RS16570 (AVM03_16560) - 3427744..3428112 (-) 369 WP_003156070.1 spore coat protein -
  AVM03_RS16575 (AVM03_16565) - 3428130..3428375 (-) 246 WP_003156068.1 hypothetical protein -
  AVM03_RS16580 (AVM03_16570) - 3428842..3430002 (+) 1161 WP_050436848.1 sensor histidine kinase -
  AVM03_RS16585 (AVM03_16575) vraR 3429995..3430630 (+) 636 WP_058906596.1 response regulator transcription factor Regulator
  AVM03_RS16590 (AVM03_16580) - 3430729..3432882 (+) 2154 WP_057080639.1 MMPL family transporter -
  AVM03_RS16595 (AVM03_16585) - 3432918..3433640 (-) 723 WP_024084943.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  AVM03_RS16600 (AVM03_16590) abc-f 3433777..3435405 (-) 1629 WP_014304445.1 ribosomal protection-like ABC-F family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23591.36 Da        Isoelectric Point: 5.6500

>NTDB_id=142239 AVM03_RS16585 WP_058906596.1 3429995..3430630(+) (vraR) [Bacillus amyloliquefaciens strain MBE1283]
MYKVLIVDDHLVVREGLKLLIETNDHYTITGEAENGKTAVRLAAELKPDVILMDLYMPEMSGLEAIKQIKEHSDVPIIIL
TTYNEDHLMIEGIESGANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTDKEIIVLQAVAK
GHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGILKLNI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=142239 AVM03_RS16585 WP_058906596.1 3429995..3430630(+) (vraR) [Bacillus amyloliquefaciens strain MBE1283]
ATGTATAAAGTGTTAATAGTAGATGACCATCTTGTCGTCAGAGAAGGTCTGAAGCTTTTGATAGAAACAAATGACCATTA
CACCATAACGGGAGAGGCGGAAAACGGGAAAACCGCCGTCCGCCTCGCAGCGGAACTAAAGCCCGATGTCATTCTCATGG
ATCTGTACATGCCGGAAATGAGCGGGCTGGAAGCCATTAAACAGATAAAAGAGCATTCTGATGTGCCGATTATTATTTTG
ACGACCTATAATGAAGATCATCTGATGATAGAAGGCATTGAATCAGGCGCGAACGGTTATCTGCTGAAGGACACAAGCTC
AGAAACCTTATTTCATACGATGGATGCGGCGGTGAGGGGAGAAGTGCTTCTGCAGCCGGACATCTTGCGCCGTTTCCGGG
AAATGAAAATGGAACGGGCAAATGCCAATGAAACACAGCTGACGGACAAGGAAATCATAGTTCTGCAAGCCGTGGCGAAA
GGCCATAAAAGCAAAGCGATCGCCTTCGATTTAGGAATCTCAGAGCGGACGGTAAAAGCGAGATTAACATCGATTTATAA
CAAATTAGGCGCTGATTCGCGGACGGAAGCCGTCACCATTGCCATGCAAAAAGGCATTCTGAAACTGAATATATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.321

99.052

0.37