Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AVM03_RS16005 Genome accession   NZ_CP013727
Coordinates   3334484..3335614 (+) Length   376 a.a.
NCBI ID   WP_076984126.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3329484..3340614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS20155 - 3329597..3329758 (+) 162 WP_014304372.1 hypothetical protein -
  AVM03_RS15970 (AVM03_15960) - 3329860..3330426 (+) 567 WP_224979435.1 DUF4145 domain-containing protein -
  AVM03_RS15975 (AVM03_15965) - 3330552..3330815 (+) 264 WP_058906726.1 hypothetical protein -
  AVM03_RS19790 - 3330876..3331118 (+) 243 Protein_3205 phage terminase small subunit-related protein -
  AVM03_RS20315 (AVM03_15975) - 3331435..3331689 (+) 255 Protein_3206 peptidoglycan-binding domain-containing protein -
  AVM03_RS15990 (AVM03_15980) - 3332106..3332873 (+) 768 WP_079890911.1 septation ring formation regulator EzrA -
  AVM03_RS15995 (AVM03_15985) - 3332936..3334069 (+) 1134 WP_025853743.1 hypothetical protein -
  AVM03_RS16000 (AVM03_15990) - 3334145..3334348 (+) 204 WP_228767510.1 DUF2651 family protein -
  AVM03_RS16005 (AVM03_15995) rapC 3334484..3335614 (+) 1131 WP_076984126.1 Rap family tetratricopeptide repeat protein Regulator
  AVM03_RS20660 - 3335614..3335748 (+) 135 WP_254922222.1 hypothetical protein -
  AVM03_RS20515 (AVM03_16000) - 3336105..3336335 (-) 231 WP_015388689.1 hypothetical protein -
  AVM03_RS16020 (AVM03_16010) - 3336716..3337273 (-) 558 WP_058906573.1 hypothetical protein -
  AVM03_RS20320 - 3337370..3338077 (-) 708 WP_229991824.1 hypothetical protein -
  AVM03_RS16030 (AVM03_16020) - 3338167..3338433 (-) 267 WP_003156241.1 hypothetical protein -
  AVM03_RS16035 (AVM03_16025) - 3338540..3339817 (-) 1278 WP_088005335.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44640.04 Da        Isoelectric Point: 5.4160

>NTDB_id=142238 AVM03_RS16005 WP_076984126.1 3334484..3335614(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
MDQVLPSSQVGVKINEWYKMIRQFSVPDAEILKAEVEQEIEEMEEDQDLLVFYSLMCFRHQLMLDSLEPEDRYRDRPTVD
ELLGKIEKPQKRLTGLLKYYSLFFRGMYEFDHKEYVEAISYYRKAERELNAVSDEMEQAEFHYKIADAYYQIDQHFVSLN
HLKKAKQLFEKSQLYKVKVIGCNMMVGANMYDMYRLTEAESYYREALSIARGLDEEKVKRIIGVIFHNLGLVYLRGKNLI
AAEENFKKAIDVKEHIDTVYGVRSLYMMANVLYQCDKAKEARFFYETALNRARTSNEEEYLAKLKIINSLYEEYNETEVK
QSLGYLEEKRLWSDFAELTEKLGDFHFEKRNYAEGRNFLKKTIHAQTQILKVTEAI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=142238 AVM03_RS16005 WP_076984126.1 3334484..3335614(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
GTGGACCAAGTTTTACCGTCGTCCCAAGTTGGTGTCAAGATCAATGAATGGTACAAAATGATTCGCCAGTTCAGTGTGCC
TGATGCTGAGATTTTAAAGGCTGAAGTAGAACAGGAAATAGAGGAGATGGAAGAGGATCAGGATTTGCTTGTCTTTTATT
CATTGATGTGCTTTCGTCACCAATTGATGTTAGATTCCTTGGAGCCGGAAGACAGATATAGAGATCGCCCTACAGTCGAC
GAACTGCTTGGAAAAATAGAAAAACCACAAAAAAGACTTACAGGCCTCTTGAAATATTACTCATTGTTTTTTCGTGGAAT
GTATGAATTTGATCATAAAGAGTATGTTGAAGCGATAAGCTATTATCGCAAAGCAGAGAGAGAGTTGAATGCTGTATCAG
ATGAAATGGAGCAAGCTGAATTTCATTACAAAATAGCTGATGCCTATTATCAAATTGATCAGCACTTTGTTTCCCTCAAT
CATTTAAAAAAAGCCAAGCAATTGTTTGAAAAAAGTCAACTATACAAAGTGAAAGTGATTGGCTGTAATATGATGGTCGG
TGCTAACATGTACGATATGTACAGGCTGACGGAGGCAGAATCATATTATCGGGAAGCATTAAGTATCGCCCGTGGCTTGG
ATGAGGAAAAAGTGAAAAGAATTATCGGAGTGATCTTTCATAACTTAGGCTTAGTTTATTTAAGAGGGAAAAATTTGATT
GCTGCTGAAGAGAATTTCAAAAAGGCAATAGACGTGAAAGAACATATTGATACAGTGTATGGAGTGAGATCATTATATAT
GATGGCGAATGTCCTGTACCAATGTGATAAAGCCAAGGAAGCACGTTTCTTTTATGAAACGGCTTTAAATCGTGCTCGGA
CTTCTAATGAAGAGGAATATTTGGCTAAATTAAAAATCATTAATTCATTGTACGAAGAATATAATGAAACAGAAGTGAAA
CAAAGCTTAGGTTACTTGGAAGAGAAACGCCTTTGGTCTGATTTCGCAGAGCTAACCGAAAAATTAGGTGACTTTCATTT
TGAGAAGAGAAACTATGCAGAGGGAAGAAACTTTTTAAAGAAAACCATACATGCCCAAACACAAATACTTAAGGTTACGG
AGGCTATATAA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(145-296)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

37.534

99.202

0.372