Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | UE46_RS02545 | Genome accession | NZ_CP011102 |
| Coordinates | 538450..538815 (+) | Length | 121 a.a. |
| NCBI ID | WP_036059660.1 | Uniprot ID | A0A1S7FRJ5 |
| Organism | Listeria weihenstephanensis strain WS 4560 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 533450..543815
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UE46_RS02515 (UE46_02495) | - | 533821..534225 (+) | 405 | WP_118907375.1 | F0F1 ATP synthase subunit epsilon | - |
| UE46_RS02520 (UE46_02500) | - | 534371..534610 (+) | 240 | WP_036059653.1 | DUF1146 family protein | - |
| UE46_RS02525 (UE46_02505) | murA | 534801..536090 (+) | 1290 | WP_036059654.1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | - |
| UE46_RS02530 (UE46_02510) | mreB | 536256..537251 (+) | 996 | WP_036059655.1 | rod shape-determining protein MreB | - |
| UE46_RS02535 (UE46_02515) | - | 537273..537719 (+) | 447 | WP_036059657.1 | GNAT family N-acetyltransferase | - |
| UE46_RS02540 (UE46_02520) | fabZ | 537722..538153 (+) | 432 | WP_036059659.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| UE46_RS02545 (UE46_02525) | ssbB | 538450..538815 (+) | 366 | WP_036059660.1 | single-stranded DNA-binding protein | Machinery gene |
| UE46_RS02550 (UE46_02530) | - | 539211..540029 (+) | 819 | WP_118907376.1 | LysM peptidoglycan-binding and 3D domain-containing protein | - |
| UE46_RS02555 (UE46_02535) | - | 540193..540924 (+) | 732 | WP_036059661.1 | WecB/TagA/CpsF family glycosyltransferase | - |
| UE46_RS02560 (UE46_02540) | menC | 540930..542055 (+) | 1126 | Protein_496 | o-succinylbenzoate synthase | - |
| UE46_RS02565 (UE46_02545) | - | 542078..543115 (+) | 1038 | WP_411431056.1 | glycosyltransferase family 4 protein | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13721.49 Da Isoelectric Point: 4.7909
>NTDB_id=142237 UE46_RS02545 WP_036059660.1 538450..538815(+) (ssbB) [Listeria weihenstephanensis strain WS 4560]
MINQVTIVGRLTEDPEVRWTSEEKAVVNVTVALNRFGKGKSLNGDADFIPCVIWGKQAENTVEYCQKGTLVGINGELQTR
NYTNREDKKVYVIEVVADKIRFLSKNKERATDDPEVFLDNE
MINQVTIVGRLTEDPEVRWTSEEKAVVNVTVALNRFGKGKSLNGDADFIPCVIWGKQAENTVEYCQKGTLVGINGELQTR
NYTNREDKKVYVIEVVADKIRFLSKNKERATDDPEVFLDNE
Nucleotide
Download Length: 366 bp
>NTDB_id=142237 UE46_RS02545 WP_036059660.1 538450..538815(+) (ssbB) [Listeria weihenstephanensis strain WS 4560]
ATGATTAATCAAGTAACAATAGTCGGCAGGCTCACTGAAGATCCAGAAGTGCGATGGACATCTGAAGAGAAAGCGGTAGT
AAATGTAACAGTAGCCTTAAATAGATTTGGAAAAGGTAAGAGTTTGAACGGGGATGCAGATTTCATTCCATGTGTTATAT
GGGGTAAACAAGCAGAAAATACGGTAGAATACTGCCAGAAAGGTACATTAGTAGGTATTAATGGGGAGCTACAAACAAGG
AATTATACTAATAGAGAGGATAAAAAAGTCTACGTTATAGAAGTTGTGGCAGATAAAATACGATTTTTAAGTAAAAATAA
AGAGCGAGCAACAGATGATCCTGAGGTTTTCTTAGATAATGAGTGA
ATGATTAATCAAGTAACAATAGTCGGCAGGCTCACTGAAGATCCAGAAGTGCGATGGACATCTGAAGAGAAAGCGGTAGT
AAATGTAACAGTAGCCTTAAATAGATTTGGAAAAGGTAAGAGTTTGAACGGGGATGCAGATTTCATTCCATGTGTTATAT
GGGGTAAACAAGCAGAAAATACGGTAGAATACTGCCAGAAAGGTACATTAGTAGGTATTAATGGGGAGCTACAAACAAGG
AATTATACTAATAGAGAGGATAAAAAAGTCTACGTTATAGAAGTTGTGGCAGATAAAATACGATTTTTAAGTAAAAATAA
AGAGCGAGCAACAGATGATCCTGAGGTTTTCTTAGATAATGAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
53.097 |
93.388 |
0.496 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.429 |
86.777 |
0.446 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.544 |
85.124 |
0.413 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40 |
90.909 |
0.364 |