Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   AVM03_RS15915 Genome accession   NZ_CP013727
Coordinates   3314118..3314552 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3309118..3319552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS15885 (AVM03_15875) - 3309791..3310651 (+) 861 WP_015388697.1 SDR family oxidoreductase -
  AVM03_RS15890 (AVM03_15880) - 3310664..3311167 (+) 504 WP_014304360.1 D-lyxose/D-mannose family sugar isomerase -
  AVM03_RS15895 (AVM03_15885) - 3311253..3311876 (+) 624 WP_014304361.1 GNAT family N-acetyltransferase -
  AVM03_RS15900 (AVM03_15890) - 3311883..3312305 (+) 423 WP_003156270.1 pyridoxamine 5'-phosphate oxidase family protein -
  AVM03_RS15905 (AVM03_15895) - 3312804..3313613 (+) 810 WP_014304362.1 lipid II flippase Amj family protein -
  AVM03_RS15910 (AVM03_15900) - 3313651..3313941 (-) 291 WP_003156265.1 DUF3817 domain-containing protein -
  AVM03_RS15915 (AVM03_15905) lrpC 3314118..3314552 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  AVM03_RS15920 (AVM03_15910) - 3314616..3316802 (+) 2187 WP_058906724.1 DNA topoisomerase III -
  AVM03_RS15925 (AVM03_15915) - 3317035..3318120 (+) 1086 WP_046559351.1 hypothetical protein -
  AVM03_RS15930 (AVM03_15920) - 3318101..3318949 (+) 849 WP_014304365.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=142237 AVM03_RS15915 WP_003156263.1 3314118..3314552(+) (lrpC) [Bacillus amyloliquefaciens strain MBE1283]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=142237 AVM03_RS15915 WP_003156263.1 3314118..3314552(+) (lrpC) [Bacillus amyloliquefaciens strain MBE1283]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATATGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment