Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AVM03_RS14095 Genome accession   NZ_CP013727
Coordinates   2944984..2945214 (+) Length   76 a.a.
NCBI ID   WP_004264650.1    Uniprot ID   A7Z0H7
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2939984..2950214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS14065 (AVM03_14055) ridA 2940172..2940552 (+) 381 WP_004264663.1 2-iminobutanoate/2-iminopropanoate deaminase -
  AVM03_RS14070 (AVM03_14060) spoVG 2940748..2941041 (+) 294 WP_004264660.1 septation regulator SpoVG -
  AVM03_RS14075 (AVM03_14065) glmU 2941233..2942603 (+) 1371 WP_004264658.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AVM03_RS14080 (AVM03_14070) - 2942625..2943578 (+) 954 WP_004264656.1 ribose-phosphate diphosphokinase -
  AVM03_RS14085 (AVM03_14075) - 2943663..2944271 (+) 609 WP_004264654.1 50S ribosomal protein L25/general stress protein Ctc -
  AVM03_RS14090 (AVM03_14080) pth 2944356..2944922 (+) 567 WP_004264652.1 aminoacyl-tRNA hydrolase -
  AVM03_RS14095 (AVM03_14085) subA/fin 2944984..2945214 (+) 231 WP_004264650.1 anti-sigma-F factor Fin family protein Machinery gene
  AVM03_RS14100 (AVM03_14090) mfd 2945284..2948817 (+) 3534 WP_015388787.1 transcription-repair coupling factor -
  AVM03_RS14105 (AVM03_14095) spoVT 2948954..2949490 (+) 537 WP_004264646.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8899.87 Da        Isoelectric Point: 5.8002

>NTDB_id=142220 AVM03_RS14095 WP_004264650.1 2944984..2945214(+) (subA/fin) [Bacillus amyloliquefaciens strain MBE1283]
MALHYFCRHCGFKVGSLEYSTVPTQSLGFQHLTNEERNDMISYKDNGDVHVLTICEDCQEALERNPHYHEHNTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=142220 AVM03_RS14095 WP_004264650.1 2944984..2945214(+) (subA/fin) [Bacillus amyloliquefaciens strain MBE1283]
ATGGCTTTGCATTATTTCTGCCGCCACTGCGGCTTTAAGGTAGGGAGCCTGGAATATTCGACGGTGCCGACACAGTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCATATAAAGACAATGGAGATGTCCATGTTCTTACAA
TTTGTGAAGACTGCCAAGAGGCGCTGGAACGCAATCCGCACTACCATGAACACAACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

86.842

100

0.868

Multiple sequence alignment