Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AVM03_RS12980 Genome accession   NZ_CP013727
Coordinates   2718972..2719661 (-) Length   229 a.a.
NCBI ID   WP_057080341.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2713972..2724661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS12960 (AVM03_12950) - 2714876..2715223 (-) 348 WP_004393256.1 YxeA family protein -
  AVM03_RS12965 (AVM03_12955) yxdM 2715237..2717105 (-) 1869 WP_004393253.1 ABC transporter permease YxdM -
  AVM03_RS12970 (AVM03_12960) yxdL 2717080..2717853 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  AVM03_RS12975 (AVM03_12965) yxdK 2717998..2718975 (-) 978 WP_014306127.1 two-component system sensor histidine kinase YxdK -
  AVM03_RS12980 (AVM03_12970) braR 2718972..2719661 (-) 690 WP_057080341.1 two-component system response regulator YxdJ Regulator
  AVM03_RS12985 (AVM03_12975) - 2719811..2721250 (-) 1440 WP_058906453.1 sensor histidine kinase -
  AVM03_RS12990 (AVM03_12980) - 2721247..2721969 (-) 723 WP_058906454.1 response regulator transcription factor -
  AVM03_RS12995 (AVM03_12985) - 2722212..2723123 (+) 912 WP_058906455.1 ABC transporter ATP-binding protein -
  AVM03_RS13000 (AVM03_12990) - 2723120..2723878 (+) 759 WP_007614844.1 ABC transporter permease -
  AVM03_RS13005 (AVM03_12995) - 2723895..2724629 (+) 735 WP_229154627.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26573.31 Da        Isoelectric Point: 4.8564

>NTDB_id=142208 AVM03_RS12980 WP_057080341.1 2718972..2719661(-) (braR) [Bacillus amyloliquefaciens strain MBE1283]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRVLS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=142208 AVM03_RS12980 WP_057080341.1 2718972..2719661(-) (braR) [Bacillus amyloliquefaciens strain MBE1283]
ATGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTATGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGTGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393