Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   bslm_RS07595 Genome accession   NZ_CP011101
Coordinates   1491631..1491909 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. LM 4-2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486631..1496909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS07580 (BsLM_1534) - 1487819..1488730 (+) 912 WP_046380996.1 ketopantoate reductase family protein -
  bslm_RS07585 (BsLM_1535) - 1488764..1489996 (-) 1233 WP_003232341.1 aminopeptidase -
  bslm_RS20620 (BsLM_1536) - 1490105..1490239 (-) 135 WP_003238865.1 protein YkpC -
  bslm_RS07590 (BsLM_1537) mreBH 1490340..1491347 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  bslm_RS07595 (BsLM_1538) abrB 1491631..1491909 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  bslm_RS07600 (BsLM_1539) kinC 1492099..1493385 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  bslm_RS07605 (BsLM_1540) - 1493401..1494228 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  bslm_RS07610 (BsLM_1541) ktrC 1494291..1494956 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  bslm_RS07615 (BsLM_1542) ade 1495111..1496844 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=142184 bslm_RS07595 WP_003244728.1 1491631..1491909(+) (abrB) [Bacillus sp. LM 4-2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=142184 bslm_RS07595 WP_003244728.1 1491631..1491909(+) (abrB) [Bacillus sp. LM 4-2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment