Detailed information NTG0142183

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: AVM03_RS08900
• Genome accession: NZ_CP013727
• Coordinates: 1911311..1912441 (-)
• Length: 376 a.a.
• NCBI ID: WP_015387807.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MBE1283
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1906311..1917441

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVM03_RS08875 (AVM03_08865)	-	1906665..1907510 (-)	846	WP_024085723.1	glucosaminidase domain-containing protein	-
AVM03_RS08880 (AVM03_08870)	hmpA	1907652..1908827 (-)	1176	WP_025853942.1	NO-inducible flavohemoprotein	-
AVM03_RS08885 (AVM03_08875)	-	1909045..1909686 (+)	642	WP_058906303.1	cupin domain-containing protein	-
AVM03_RS08890 (AVM03_08880)	-	1909739..1910059 (-)	321	WP_015387811.1	hypothetical protein	-
AVM03_RS20435	-	1910811..1910995 (+)	185	Protein_1808	hypothetical protein	-
AVM03_RS20640	-	1911051..1911176 (-)	126	WP_015387808.1	hypothetical protein	-
AVM03_RS08900 (AVM03_08890)	rapC	1911311..1912441 (-)	1131	WP_015387807.1	Rap family tetratricopeptide repeat protein	Regulator
AVM03_RS08905 (AVM03_08895)	-	1912759..1912962 (+)	204	WP_044052958.1	hypothetical protein	-
AVM03_RS08910 (AVM03_08900)	-	1913083..1913589 (-)	507	Protein_1812	SMI1/KNR4 family protein	-
AVM03_RS08915 (AVM03_08905)	-	1913641..1914237 (-)	597	WP_058906304.1	SMI1/KNR4 family protein	-
AVM03_RS08920 (AVM03_08910)	-	1914239..1915990 (-)	1752	WP_058906305.1	T7SS effector LXG polymorphic toxin	-
AVM03_RS08925 (AVM03_08915)	-	1916027..1916461 (-)	435	WP_155589876.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44378.80 Da
• Isoelectric Point: 6.5102

>NTDB_id=142183 AVM03_RS08900 WP_015387807.1 1911311..1912441(-) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYEQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQLGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=142183 AVM03_RS08900 WP_015387807.1 1911311..1912441(-) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAATTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGTCACGTCTCTATGCATCAC
GTAAAGCAAGCACTCGATATTTACGAGCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGTAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAATTGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.106	100	0.404