Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   bslm_RS07480 Genome accession   NZ_CP011101
Coordinates   1467562..1468137 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus sp. LM 4-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462562..1473137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  bslm_RS07450 (BsLM_1507) dapD 1462750..1463460 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  bslm_RS07455 (BsLM_1508) - 1463530..1464654 (+) 1125 WP_046380993.1 N-acetyldiaminopimelate deacetylase -
  bslm_RS07460 (BsLM_1509) - 1464716..1464961 (+) 246 WP_003232382.1 YkuS family protein -
  bslm_RS07465 (BsLM_1510) mscT 1464998..1465801 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  bslm_RS07470 (BsLM_1511) ahpA 1466038..1466580 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  bslm_RS07475 (BsLM_1512) ykuV 1466650..1467096 (+) 447 WP_024571971.1 thiol-disulfide oxidoreductase YkuV -
  bslm_RS07480 (BsLM_1514) rok 1467562..1468137 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  bslm_RS07485 (BsLM_1515) cse15 1468178..1469143 (-) 966 WP_024571970.1 spore protein Cse15 -
  bslm_RS07490 (BsLM_1516) - 1469280..1469879 (+) 600 WP_024571969.1 molybdenum cofactor guanylyltransferase -
  bslm_RS07495 (BsLM_1517) - 1469930..1470949 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  bslm_RS07500 (BsLM_1518) glp 1470967..1472259 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  bslm_RS07505 (BsLM_1519) mobB 1472220..1472741 (+) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=142183 bslm_RS07480 WP_003232378.1 1467562..1468137(+) (rok) [Bacillus sp. LM 4-2]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=142183 bslm_RS07480 WP_003232378.1 1467562..1468137(+) (rok) [Bacillus sp. LM 4-2]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment