Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AVM03_RS08485 Genome accession   NZ_CP013727
Coordinates   1849639..1850334 (-) Length   231 a.a.
NCBI ID   WP_014305616.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844639..1855334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS08465 (AVM03_08455) - 1845029..1845739 (-) 711 WP_015387829.1 TIGR02206 family membrane protein -
  AVM03_RS08470 (AVM03_08460) - 1845847..1847787 (-) 1941 WP_003152291.1 FtsX-like permease family protein -
  AVM03_RS08475 (AVM03_08465) - 1847784..1848539 (-) 756 WP_015387828.1 ABC transporter ATP-binding protein -
  AVM03_RS08480 (AVM03_08470) - 1848642..1849646 (-) 1005 WP_058906292.1 sensor histidine kinase -
  AVM03_RS08485 (AVM03_08475) braR 1849639..1850334 (-) 696 WP_014305616.1 response regulator transcription factor Regulator
  AVM03_RS08490 (AVM03_08480) - 1850398..1851708 (-) 1311 WP_003152283.1 ABC transporter permease -
  AVM03_RS08495 (AVM03_08485) - 1851698..1852393 (-) 696 WP_003152281.1 ABC transporter ATP-binding protein -
  AVM03_RS08500 (AVM03_08490) - 1852409..1853392 (-) 984 WP_058906293.1 hypothetical protein -
  AVM03_RS08505 (AVM03_08495) - 1853429..1854415 (-) 987 WP_058906294.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26853.11 Da        Isoelectric Point: 7.1196

>NTDB_id=142182 AVM03_RS08485 WP_014305616.1 1849639..1850334(-) (braR) [Bacillus amyloliquefaciens strain MBE1283]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFTEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=142182 AVM03_RS08485 WP_014305616.1 1849639..1850334(-) (braR) [Bacillus amyloliquefaciens strain MBE1283]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCACGAGATGAAGGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAGGATTTCAGCCGGGTCATCCGGGAGTTTACTGAAATTAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCACCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAACTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCCGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAGGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385

Multiple sequence alignment