Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AVM03_RS04505 Genome accession   NZ_CP013727
Coordinates   1037800..1038936 (+) Length   378 a.a.
NCBI ID   WP_057080784.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032800..1043936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS04480 (AVM03_04475) - 1032812..1033240 (+) 429 WP_024085498.1 hypothetical protein -
  AVM03_RS04485 (AVM03_04480) - 1033315..1033836 (+) 522 WP_024085499.1 hypothetical protein -
  AVM03_RS20410 - 1034081..1034395 (+) 315 Protein_916 ATP-dependent DNA ligase -
  AVM03_RS04490 (AVM03_04485) - 1034672..1035136 (+) 465 WP_025852481.1 hypothetical protein -
  AVM03_RS20615 - 1035648..1035776 (-) 129 WP_024085501.1 hypothetical protein -
  AVM03_RS04495 (AVM03_04490) - 1036351..1036725 (+) 375 WP_024085504.1 YoqO family protein -
  AVM03_RS04500 (AVM03_04495) - 1036985..1037437 (-) 453 WP_058906129.1 hypothetical protein -
  AVM03_RS04505 (AVM03_04500) rapC 1037800..1038936 (+) 1137 WP_057080784.1 Rap family tetratricopeptide repeat protein Regulator
  AVM03_RS04510 (AVM03_04505) - 1038926..1039108 (+) 183 WP_003153655.1 hypothetical protein -
  AVM03_RS04515 (AVM03_04510) - 1039433..1040452 (+) 1020 WP_043867221.1 hypothetical protein -
  AVM03_RS04520 (AVM03_04515) - 1040513..1040872 (-) 360 WP_014305240.1 hypothetical protein -
  AVM03_RS04525 (AVM03_04520) - 1040878..1041345 (-) 468 WP_024085506.1 DUF4879 domain-containing protein -
  AVM03_RS20750 - 1041602..1041669 (+) 68 Protein_926 putative holin-like toxin -
  AVM03_RS04530 (AVM03_04525) - 1041920..1042258 (-) 339 WP_014305242.1 hypothetical protein -
  AVM03_RS20415 - 1042472..1042654 (-) 183 WP_223203798.1 GNAT family N-acetyltransferase -
  AVM03_RS20420 - 1042664..1042924 (-) 261 WP_223151887.1 GNAT family N-acetyltransferase -
  AVM03_RS04540 (AVM03_04535) - 1043020..1043616 (-) 597 WP_014305245.1 SMI1/KNR4 family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44597.21 Da        Isoelectric Point: 4.9725

>NTDB_id=142147 AVM03_RS04505 WP_057080784.1 1037800..1038936(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
MEQLISSSKVGLKINKWYKYIRLFSVADAEILKGEVEQEIEHMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQSNSLHNSSRLLDILLMLAKTHFKLFNTVDGKQVCEQGLMLSKELNDDVLGKMFDFLMGLFVENDKERLF
KILDYLESKAMLSDVEDLATDAAMYYNVNEDHKVATAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=142147 AVM03_RS04505 WP_057080784.1 1037800..1038936(+) (rapC) [Bacillus amyloliquefaciens strain MBE1283]
TTGGAGCAATTGATCTCTTCTTCAAAGGTTGGCTTAAAAATCAATAAATGGTACAAATACATAAGATTATTCAGTGTTGC
AGATGCAGAAATTCTAAAGGGTGAAGTTGAACAAGAAATAGAGCATATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTACAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATTGTTCAAGCAATAGAAACCTACAAAGCACACGAGACATACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCCCGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAAGTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTCTAAT
GTTGGCAAAAACGCACTTTAAATTATTCAACACGGTTGATGGAAAACAGGTTTGTGAACAAGGTCTTATGCTTTCAAAGG
AGTTGAACGATGACGTATTAGGAAAAATGTTTGATTTTCTTATGGGTTTATTCGTTGAGAATGACAAAGAACGACTTTTT
AAAATCTTAGATTACTTAGAATCAAAAGCTATGCTTTCAGATGTGGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTACAGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(191-252)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

46.032

100

0.46
  rapF Bacillus subtilis subsp. subtilis str. 168

45.407

100

0.458