Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AVM03_RS02995 Genome accession   NZ_CP013727
Coordinates   628141..628572 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain MBE1283     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 623141..633572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVM03_RS02975 (AVM03_02970) spoVS 623710..623970 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  AVM03_RS02980 (AVM03_02975) tdh 624229..625275 (+) 1047 WP_024085310.1 L-threonine 3-dehydrogenase -
  AVM03_RS02985 (AVM03_02980) - 625288..626466 (+) 1179 WP_095324086.1 glycine C-acetyltransferase -
  AVM03_RS02990 (AVM03_02985) miaB 626609..628138 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AVM03_RS02995 (AVM03_02990) ymcA 628141..628572 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  AVM03_RS03000 (AVM03_02995) cotE 628826..629371 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  AVM03_RS03005 (AVM03_03000) hexA 629490..632075 (+) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=142139 AVM03_RS02995 WP_003154113.1 628141..628572(+) (ymcA) [Bacillus amyloliquefaciens strain MBE1283]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=142139 AVM03_RS02995 WP_003154113.1 628141..628572(+) (ymcA) [Bacillus amyloliquefaciens strain MBE1283]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AACAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATCCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916