Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   AU380_RS16370 Genome accession   NZ_CP013696
Coordinates   3534918..3535247 (+) Length   109 a.a.
NCBI ID   WP_023115163.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 12-4-4(59)     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3529918..3540247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU380_RS16355 (AU380_16355) - 3530563..3531513 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  AU380_RS16360 (AU380_16360) - 3531535..3532575 (+) 1041 WP_371032227.1 MraY family glycosyltransferase -
  AU380_RS16365 (AU380_16365) - 3532730..3534727 (+) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  AU380_RS16370 (AU380_16370) comEA/comE1 3534918..3535247 (+) 330 WP_023115163.1 ComEA family DNA-binding protein Machinery gene
  AU380_RS16380 (AU380_16380) - 3535464..3536660 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  AU380_RS16385 (AU380_16385) uvrB 3536848..3538860 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11293.27 Da        Isoelectric Point: 9.1462

>NTDB_id=142071 AU380_RS16370 WP_023115163.1 3534918..3535247(+) (comEA/comE1) [Pseudomonas aeruginosa strain 12-4-4(59)]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDAAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=142071 AU380_RS16370 WP_023115163.1 3534918..3535247(+) (comEA/comE1) [Pseudomonas aeruginosa strain 12-4-4(59)]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
CGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCTAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.346

95.413

0.394

Multiple sequence alignment