Detailed information NTG0142065

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AU380_RS13750
• Genome accession: NZ_CP013696
• Coordinates: 2980591..2981595 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 12-4-4(59)
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2975591..2986595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AU380_RS13720 (AU380_13720)	fghA	2975683..2976534 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
AU380_RS13725 (AU380_13725)	ispF	2976605..2977078 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AU380_RS13730 (AU380_13730)	truD	2977075..2978142 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
AU380_RS13735 (AU380_13735)	surE	2978130..2978879 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
AU380_RS13740 (AU380_13740)	-	2978912..2979547 (+)	636	WP_079755226.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AU380_RS13745 (AU380_13745)	-	2979593..2980486 (+)	894	WP_058150246.1	peptidoglycan DD-metalloendopeptidase family protein	-
AU380_RS13750 (AU380_13750)	rpoS	2980591..2981595 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
AU380_RS13755 (AU380_13755)	fdxA	2982022..2982345 (-)	324	WP_003119354.1	ferredoxin FdxA	-
AU380_RS13760 (AU380_13760)	mutS	2982412..2984979 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
AU380_RS13765 (AU380_13765)	-	2985105..2986112 (-)	1008	WP_058150244.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=142065 AU380_RS13750 WP_003113871.1 2980591..2981595(+) (rpoS) [Pseudomonas aeruginosa strain 12-4-4(59)]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=142065 AU380_RS13750 WP_003113871.1 2980591..2981595(+) (rpoS) [Pseudomonas aeruginosa strain 12-4-4(59)]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAAGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653