Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   AU380_RS08905 Genome accession   NZ_CP013696
Coordinates   1956483..1956848 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain 12-4-4(59)     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951483..1961848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU380_RS08875 (AU380_08875) pyrR 1952105..1952617 (-) 513 WP_023097137.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AU380_RS08880 (AU380_08880) ruvX 1952729..1953163 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  AU380_RS08885 (AU380_08885) - 1953163..1953732 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  AU380_RS08890 (AU380_08890) - 1953781..1954674 (-) 894 WP_003162015.1 energy transducer TonB -
  AU380_RS08895 (AU380_08895) gshB 1954821..1955774 (-) 954 WP_003100943.1 glutathione synthase -
  AU380_RS08900 (AU380_08900) pilG 1956029..1956436 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  AU380_RS08905 (AU380_08905) pilH 1956483..1956848 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  AU380_RS08910 (AU380_08910) - 1956899..1957435 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  AU380_RS08915 (AU380_08915) pilJ 1957520..1959568 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  AU380_RS08920 (AU380_08920) pilK 1959629..1960504 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=142053 AU380_RS08905 WP_003084587.1 1956483..1956848(+) (pilH) [Pseudomonas aeruginosa strain 12-4-4(59)]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=142053 AU380_RS08905 WP_003084587.1 1956483..1956848(+) (pilH) [Pseudomonas aeruginosa strain 12-4-4(59)]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364