Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AzCIB_RS10010 Genome accession   NZ_CP011072
Coordinates   2261888..2263261 (-) Length   457 a.a.
NCBI ID   WP_050415763.1    Uniprot ID   -
Organism   Azoarcus sp. CIB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2256888..2268261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AzCIB_RS09990 (AzCIB_2021) - 2257981..2258688 (-) 708 WP_050415759.1 ABC transporter ATP-binding protein -
  AzCIB_RS09995 (AzCIB_2022) - 2258772..2259965 (-) 1194 WP_050415760.1 ABC transporter permease -
  AzCIB_RS10000 (AzCIB_2023) - 2259962..2261146 (-) 1185 WP_050415761.1 efflux RND transporter periplasmic adaptor subunit -
  AzCIB_RS10005 (AzCIB_2024) - 2261143..2261754 (-) 612 WP_050415762.1 TetR family transcriptional regulator -
  AzCIB_RS10010 (AzCIB_2025) radA 2261888..2263261 (-) 1374 WP_050415763.1 DNA repair protein RadA Machinery gene
  AzCIB_RS10015 (AzCIB_2026) - 2263261..2264178 (-) 918 WP_198149656.1 LysR family transcriptional regulator -
  AzCIB_RS10020 (AzCIB_2027) lplT 2264357..2265610 (+) 1254 WP_050415764.1 lysophospholipid transporter LplT -
  AzCIB_RS10025 (AzCIB_2028) - 2265651..2266505 (-) 855 WP_050418321.1 uracil-DNA glycosylase -
  AzCIB_RS10030 (AzCIB_2029) rimI 2266538..2266990 (-) 453 WP_232299406.1 ribosomal protein S18-alanine N-acetyltransferase -
  AzCIB_RS10035 (AzCIB_2030) tsaB 2266987..2267679 (-) 693 WP_050415765.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  AzCIB_RS10040 - 2267764..2267901 (-) 138 WP_157058479.1 hypothetical protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48550.01 Da        Isoelectric Point: 7.6160

>NTDB_id=142025 AzCIB_RS10010 WP_050415763.1 2261888..2263261(-) (radA) [Azoarcus sp. CIB]
MAKAKTSFVCSECGGQVPRWQGQCPQCKGWNTLVETVIEATAPGNSRFAALAGTTGRLQSLAELEPREEPRTPTGIEEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALSALAARQAAIYVSGEESGEQVALRAQRLQLDPAGLKLLPEINLERILAT
LKEAKPRIAVIDSIQTVYSEALQSAPGSVAQVRECAAQLTRFAKQSGTCLIMVGHVTKDGTLAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSAIFLSQHSQQVAGSCVLVTQEGTRPLLVEIQALVDGAHSPN
PRRLSVGLEQNRLAMLLAVLHRHAGVVCFDQDVFVNAVGGVKIAEPAADLAVLLAIVSSLRSRALPRELVVFGEVGLAGE
IRPAPRGQERLKEAAKLGFTVAIIPKANAPKQAIAGMRVIAVDRIEEAIEQAREVEA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=142025 AzCIB_RS10010 WP_050415763.1 2261888..2263261(-) (radA) [Azoarcus sp. CIB]
ATGGCGAAGGCGAAGACGAGCTTCGTCTGCAGCGAGTGCGGCGGACAGGTGCCGCGCTGGCAGGGCCAGTGTCCGCAGTG
CAAGGGCTGGAACACGCTGGTCGAGACGGTGATTGAGGCCACTGCGCCGGGTAATAGCCGGTTTGCGGCGCTGGCCGGTA
CGACCGGCAGGCTGCAGTCGCTCGCGGAACTCGAACCGCGCGAGGAGCCGCGGACGCCGACGGGGATCGAGGAGTTCGAC
CGCGTGCTCGGCGGCGGTCTGGTCGCCGGTGGCGTGGTGCTGATCGGCGGCGATCCGGGTATCGGCAAGTCGACACTGCT
GCTGCAGGCGCTGTCGGCGCTCGCGGCGCGGCAGGCGGCGATCTACGTGAGCGGCGAGGAGTCGGGCGAGCAGGTGGCGC
TGCGTGCGCAGCGCCTGCAGCTCGATCCGGCGGGACTGAAGTTGTTGCCGGAGATCAACCTCGAACGCATCCTCGCGACG
CTGAAGGAGGCGAAGCCGCGCATCGCGGTGATCGACTCGATCCAGACGGTGTATTCGGAGGCGCTACAGTCGGCGCCCGG
TTCGGTGGCGCAGGTGCGCGAATGTGCGGCGCAGCTCACGCGCTTCGCGAAGCAGAGCGGCACGTGCCTGATCATGGTCG
GCCACGTGACCAAGGATGGCACGCTGGCGGGGCCGCGCGTGTTGGAGCACATCGTCGACACGGTGCTGTATTTCGAGGGC
GATACGCATTCGAGCTTCCGTCTCGTGCGGGCGTTCAAGAACCGCTTCGGCGCGGTCAATGAGCTGGGCGTGTTTGCGAT
GACGGAGCGTGGCCTGCGCGGCGTGAGCAATCCGTCGGCGATCTTTCTGTCGCAGCACAGCCAGCAGGTGGCGGGCAGCT
GCGTGCTGGTGACGCAGGAGGGCACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTCGACGGCGCACACAGCCCGAAT
CCGCGCCGCCTGTCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCATCGCCATGCGGGCGTGGT
GTGCTTCGACCAGGATGTCTTCGTGAATGCGGTGGGCGGTGTGAAGATCGCCGAACCGGCGGCGGACCTCGCCGTGCTGC
TGGCGATCGTGTCCTCGCTGCGCAGCCGGGCGCTGCCGCGCGAGCTGGTGGTGTTCGGCGAGGTGGGGCTGGCGGGCGAG
ATTCGCCCGGCACCGCGCGGGCAGGAGCGCCTGAAAGAGGCGGCCAAGCTCGGCTTTACGGTCGCGATCATTCCGAAAGC
CAATGCGCCCAAGCAGGCGATTGCCGGCATGCGGGTGATTGCTGTGGATCGGATCGAGGAAGCGATCGAACAGGCTCGCG
AGGTCGAGGCGTGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(359-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.495
  radA Streptococcus pneumoniae Rx1

47.046

100

0.47
  radA Streptococcus pneumoniae D39

47.046

100

0.47
  radA Streptococcus pneumoniae R6

47.046

100

0.47
  radA Streptococcus pneumoniae TIGR4

47.046

100

0.47
  radA Streptococcus mitis SK321

46.943

100

0.47
  radA Streptococcus mitis NCTC 12261

46.827

100

0.468

Multiple sequence alignment