Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VT08_RS10035 Genome accession   NZ_CP011069
Coordinates   53786..53881 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain STAB09014     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 48786..58881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT08_RS00310 (VT08_00310) purK 48855..49928 (+) 1074 WP_021340856.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VT08_RS00315 (VT08_00315) - 49930..51348 (+) 1419 WP_011888524.1 hypothetical protein -
  VT08_RS00320 (VT08_00320) purB 51368..52660 (+) 1293 WP_011284409.1 adenylosuccinate lyase -
  VT08_RS00325 (VT08_00325) comR 52791..53702 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  VT08_RS10035 comS 53786..53881 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  VT08_RS00330 (VT08_00330) ruvB 53928..54926 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  VT08_RS00335 (VT08_00335) - 55064..55501 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  VT08_RS00340 (VT08_00340) - 55524..55925 (+) 402 WP_002986671.1 MORN repeat-containing protein -
  VT08_RS00345 (VT08_00345) - 55922..57697 (+) 1776 WP_011284411.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=142009 VT08_RS10035 WP_198462994.1 53786..53881(+) (comS) [Streptococcus pyogenes strain STAB09014]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=142009 VT08_RS10035 WP_198462994.1 53786..53881(+) (comS) [Streptococcus pyogenes strain STAB09014]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment