Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AU077_RS03750 Genome accession   NZ_CP013688
Coordinates   745556..747328 (+) Length   590 a.a.
NCBI ID   WP_014294716.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 740556..752328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS03725 (AU077_03725) gdhA 740587..741939 (+) 1353 WP_058621577.1 NADP-specific glutamate dehydrogenase -
  AU077_RS03730 (AU077_03730) - 742216..742725 (+) 510 WP_058621578.1 GNAT family N-acetyltransferase -
  AU077_RS03735 (AU077_03735) - 742722..743132 (+) 411 WP_014294719.1 peptide deformylase -
  AU077_RS03740 (AU077_03740) rcrR 743308..743748 (+) 441 WP_058622012.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  AU077_RS03745 (AU077_03745) rcrP 743752..745566 (+) 1815 WP_058621579.1 ABC transporter ATP-binding protein Regulator
  AU077_RS03750 (AU077_03750) rcrQ 745556..747328 (+) 1773 WP_014294716.1 ABC transporter ATP-binding protein Regulator
  AU077_RS03755 (AU077_03755) - 747594..748570 (+) 977 Protein_763 zinc-binding dehydrogenase -
  AU077_RS03760 (AU077_03760) - 748560..749012 (+) 453 WP_058621580.1 MarR family winged helix-turn-helix transcriptional regulator -
  AU077_RS03765 (AU077_03765) - 749002..749637 (+) 636 WP_058621581.1 ABC transporter permease -
  AU077_RS03770 (AU077_03770) - 749627..750547 (+) 921 WP_058621582.1 glycine betaine ABC transporter substrate-binding protein -
  AU077_RS03775 (AU077_03775) - 750560..751333 (+) 774 WP_058621583.1 ABC transporter ATP-binding protein -
  AU077_RS03780 (AU077_03780) - 751326..751952 (+) 627 WP_014294711.1 ABC transporter permease -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65316.51 Da        Isoelectric Point: 5.3523

>NTDB_id=141933 AU077_RS03750 WP_014294716.1 745556..747328(+) (rcrQ) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MENKKKTSFYGRMKPYIRGLQLPFLLAVIGAIVSATITVIGPDKLKEITNIITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKINKVPLSYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAVGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAIKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMR
FYEIDKGQITIDSVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEAA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=141933 AU077_RS03750 WP_014294716.1 745556..747328(+) (rcrQ) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTATATTAGAGGTCTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGATTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATATAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACTGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTAACAAGGTTCCATTGAGTTACTTTGATAGTCATTCACAAGGAGATACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTAGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGTTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCTATTAAAGTTATCAATGGTGATATTACCATGGGTGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TAGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGTGCTGGTAAAACAACCATTGTTAACCTGCTCATGAGA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATAGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGATGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACGCTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGATGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGTGGCTTCTATGCTGACCTTTACAATTCACAATT
TGAAGCAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.595

99.492

0.732

Multiple sequence alignment