Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VN24_RS27105 Genome accession   NZ_CP011058
Coordinates   4524831..4525262 (-) Length   143 a.a.
NCBI ID   WP_420798581.1    Uniprot ID   -
Organism   Paenibacillus beijingensis strain DSM 24997     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4519831..4530262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VN24_RS20435 (VN24_20435) - 4521403..4522395 (+) 993 WP_045671928.1 glycosyltransferase family 2 protein -
  VN24_RS20440 (VN24_20440) - 4522515..4523654 (+) 1140 WP_045671929.1 hypothetical protein -
  VN24_RS20445 (VN24_20445) - 4523860..4524597 (+) 738 WP_082083956.1 glycoside hydrolase domain-containing protein -
  VN24_RS27105 (VN24_20450) nucA/comI 4524831..4525262 (-) 432 WP_420798581.1 hypothetical protein Machinery gene
  VN24_RS20455 (VN24_20455) - 4525444..4526472 (+) 1029 WP_052703064.1 Gfo/Idh/MocA family protein -
  VN24_RS20460 (VN24_20460) - 4526608..4527219 (+) 612 WP_045671930.1 hypothetical protein -
  VN24_RS20465 (VN24_20465) - 4527295..4527570 (-) 276 WP_045673517.1 hypothetical protein -
  VN24_RS20470 (VN24_20470) - 4527892..4529163 (+) 1272 WP_045671931.1 ATP-binding protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15563.27 Da        Isoelectric Point: 4.3913

>NTDB_id=141875 VN24_RS27105 WP_420798581.1 4524831..4525262(-) (nucA/comI) [Paenibacillus beijingensis strain DSM 24997]
MKKWLSFTLTAIIAAFIYTQYDNSGDSGQPTSADLNADVTLTFPSDRYPETAAHIKRAIAKGESAVCTIDREGADENRRL
SLGSVPAKDHYDRDEWPMAMCAEGGAGADIAYITPADNRGAGSWVGNQLEQYPDGTRILFIVE

Nucleotide


Download         Length: 432 bp        

>NTDB_id=141875 VN24_RS27105 WP_420798581.1 4524831..4525262(-) (nucA/comI) [Paenibacillus beijingensis strain DSM 24997]
TTGAAAAAATGGTTATCGTTCACTTTGACGGCAATTATCGCGGCTTTTATTTACACGCAATACGATAACAGCGGGGATTC
TGGGCAACCGACTTCGGCCGATCTGAATGCGGATGTCACCTTAACGTTTCCTTCGGACCGGTATCCGGAAACGGCTGCGC
ATATCAAACGGGCGATCGCCAAAGGCGAATCGGCCGTTTGTACGATCGACCGCGAAGGCGCGGATGAAAACCGACGCTTA
TCGCTCGGCAGCGTGCCTGCCAAGGACCACTACGACCGCGACGAATGGCCGATGGCCATGTGCGCGGAAGGCGGCGCCGG
CGCGGACATCGCATACATAACGCCGGCCGATAACCGCGGAGCCGGTTCCTGGGTCGGTAATCAGCTGGAACAATACCCGG
ACGGGACGCGGATTTTGTTTATCGTCGAATGA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.217

80.42

0.524

Multiple sequence alignment