Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BIS30_RS18050 Genome accession   NZ_CP011051
Coordinates   3445543..3445821 (+) Length   92 a.a.
NCBI ID   WP_003222317.1    Uniprot ID   A0A9Q4H8P7
Organism   Bacillus spizizenii strain T30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3440543..3450821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS18030 (BIS30_18030) - 3441735..3442646 (+) 912 WP_003222326.1 ketopantoate reductase family protein -
  BIS30_RS18035 (BIS30_18035) - 3442677..3443909 (-) 1233 WP_003222324.1 aminopeptidase -
  BIS30_RS18040 (BIS30_18040) - 3444019..3444153 (-) 135 WP_003222322.1 protein YkpC -
  BIS30_RS18045 (BIS30_18045) mreBH 3444255..3445262 (-) 1008 WP_003222320.1 cell shape-determining protein MreBH -
  BIS30_RS18050 (BIS30_18050) abrB 3445543..3445821 (+) 279 WP_003222317.1 transcriptional regulator AbhA Regulator
  BIS30_RS18055 (BIS30_18055) kinC 3446013..3447299 (+) 1287 WP_003222315.1 two-component sensor histidine kinase KinC -
  BIS30_RS18060 (BIS30_18060) - 3447316..3448143 (+) 828 WP_003222313.1 gamma-glutamylcyclotransferase -
  BIS30_RS18065 (BIS30_18065) ktrC 3448215..3448880 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BIS30_RS18070 (BIS30_18070) ade 3449038..3450771 (+) 1734 WP_003222307.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10290.08 Da        Isoelectric Point: 5.8808

>NTDB_id=141818 BIS30_RS18050 WP_003222317.1 3445543..3445821(+) (abrB) [Bacillus spizizenii strain T30]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCFMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=141818 BIS30_RS18050 WP_003222317.1 3445543..3445821(+) (abrB) [Bacillus spizizenii strain T30]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGTATTGTCATGCCGATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCCTGAAAAAGTACAAACCTCATGGCGTCT
GTTTTATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment