Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BIS30_RS15915 Genome accession   NZ_CP011051
Coordinates   3052504..3053082 (+) Length   192 a.a.
NCBI ID   WP_003224368.1    Uniprot ID   -
Organism   Bacillus spizizenii strain T30     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047504..3058082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS21645 - 3048017..3048532 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  BIS30_RS21650 hemAT 3048821..3049198 (-) 378 Protein_3076 heme-based aerotactic transducer HemAT -
  BIS30_RS15900 (BIS30_15900) - 3049452..3050981 (-) 1530 WP_003224362.1 FAD-dependent oxidoreductase -
  BIS30_RS15905 (BIS30_15905) - 3051093..3051950 (+) 858 WP_003224364.1 SDR family oxidoreductase -
  BIS30_RS15910 (BIS30_15910) - 3051978..3052211 (-) 234 WP_003224366.1 IDEAL domain-containing protein -
  BIS30_RS15915 (BIS30_15915) comK 3052504..3053082 (+) 579 WP_003224368.1 competence transcription factor ComK Regulator
  BIS30_RS15920 (BIS30_15920) - 3053125..3054024 (-) 900 WP_003224369.1 SDR family oxidoreductase -
  BIS30_RS15925 (BIS30_15925) - 3054241..3054510 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  BIS30_RS15930 (BIS30_15930) - 3054553..3056022 (-) 1470 WP_003224375.1 sodium:solute symporter -
  BIS30_RS15935 (BIS30_15935) - 3056019..3056219 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BIS30_RS15940 (BIS30_15940) - 3056445..3056807 (-) 363 WP_003224380.1 hypothetical protein -
  BIS30_RS15945 (BIS30_15945) - 3056960..3057583 (+) 624 WP_032727224.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22511.83 Da        Isoelectric Point: 8.1154

>NTDB_id=141804 BIS30_RS15915 WP_003224368.1 3052504..3053082(+) (comK) [Bacillus spizizenii strain T30]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVRMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=141804 BIS30_RS15915 WP_003224368.1 3052504..3053082(+) (comK) [Bacillus spizizenii strain T30]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGGATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGTTGC
CGATCTCCTATAATTCGTTCGAGAATCAGGTATACCGGACAGCATGGCTAAGAACTAAATTCCAAGATAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGTACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.438

100

0.984

Multiple sequence alignment