Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BIS30_RS10375 Genome accession   NZ_CP011051
Coordinates   1976485..1977597 (+) Length   370 a.a.
NCBI ID   WP_003219265.1    Uniprot ID   -
Organism   Bacillus spizizenii strain T30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971485..1982597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS10350 (BIS30_10350) rnpA 1972202..1972552 (-) 351 WP_003219260.1 ribonuclease P protein component -
  BIS30_RS10355 (BIS30_10355) rpmH 1972704..1972838 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BIS30_RS10360 (BIS30_10360) dnaA 1973458..1974798 (+) 1341 WP_003219262.1 chromosomal replication initiator protein DnaA -
  BIS30_RS10365 (BIS30_10365) dnaN 1974986..1976122 (+) 1137 WP_003219263.1 DNA polymerase III subunit beta -
  BIS30_RS10370 (BIS30_10370) rlbA 1976254..1976469 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  BIS30_RS10375 (BIS30_10375) recF 1976485..1977597 (+) 1113 WP_003219265.1 DNA replication/repair protein RecF Machinery gene
  BIS30_RS10380 (BIS30_10380) remB 1977620..1977865 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  BIS30_RS10385 (BIS30_10385) gyrB 1977920..1979836 (+) 1917 WP_003219267.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BIS30_RS10390 (BIS30_10390) gyrA 1980053..1982518 (+) 2466 WP_003219268.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42347.41 Da        Isoelectric Point: 7.7139

>NTDB_id=141787 BIS30_RS10375 WP_003219265.1 1976485..1977597(+) (recF) [Bacillus spizizenii strain T30]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPKDLSKI
GDSYQEAFSKLREKEIERGITLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=141787 BIS30_RS10375 WP_003219265.1 1976485..1977597(+) (recF) [Bacillus spizizenii strain T30]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAATCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACAGGA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATTCCCATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGCATGACCTTTCTCTTTACCAGAAAATCCTCTCGCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACGATGCTCGATGTTTTAACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCGCAGCTCGAAAAATGGGCTCAGCCTATCCATGCGGGCA
TCTCAAGAGGGCTTGAAGAGCTGACCCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTAAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTATTACGCTGTCAGGGCCTCACCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACCACGGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATACCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992

Multiple sequence alignment