Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BIS30_RS07350 Genome accession   NZ_CP011051
Coordinates   1371347..1372069 (-) Length   240 a.a.
NCBI ID   WP_013308058.1    Uniprot ID   E0U4A6
Organism   Bacillus spizizenii strain T30     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366347..1377069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS07315 (BIS30_07315) fliW 1366488..1366919 (-) 432 WP_003219723.1 flagellar assembly protein FliW -
  BIS30_RS07320 (BIS30_07320) - 1366940..1367515 (-) 576 WP_003219720.1 DUF6470 family protein -
  BIS30_RS07325 (BIS30_07325) flgL 1367562..1368458 (-) 897 WP_003219718.1 flagellar hook-associated protein FlgL -
  BIS30_RS07330 (BIS30_07330) flgK 1368468..1369991 (-) 1524 WP_003219716.1 flagellar hook-associated protein FlgK -
  BIS30_RS07335 (BIS30_07335) flgN 1370010..1370492 (-) 483 WP_003219714.1 flagellar protein FlgN -
  BIS30_RS07340 (BIS30_07340) flgM 1370508..1370774 (-) 267 WP_003219712.1 flagellar biosynthesis anti-sigma factor FlgM -
  BIS30_RS07345 (BIS30_07345) - 1370855..1371274 (-) 420 WP_003219710.1 TIGR03826 family flagellar region protein -
  BIS30_RS07350 (BIS30_07350) comFC 1371347..1372069 (-) 723 WP_013308058.1 ComF family protein Machinery gene
  BIS30_RS07355 (BIS30_07355) comFB 1372033..1372329 (-) 297 WP_003219707.1 late competence protein ComFB -
  BIS30_RS07360 (BIS30_07360) comFA 1372398..1373780 (-) 1383 WP_079996654.1 ATP-dependent helicase ComFA Machinery gene
  BIS30_RS07365 (BIS30_07365) - 1373888..1374733 (-) 846 WP_045589796.1 DegV family protein -
  BIS30_RS07370 (BIS30_07370) degU 1374831..1375520 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BIS30_RS07375 (BIS30_07375) degS 1375603..1376760 (-) 1158 WP_003219693.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27297.64 Da        Isoelectric Point: 9.4915

>NTDB_id=141775 BIS30_RS07350 WP_013308058.1 1371347..1372069(-) (comFC) [Bacillus spizizenii strain T30]
MPNEAGGGIYKLICLLCDSPFSQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCKDCEAWKSRVSD
SLLLRQNRSVYTYNDVMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREEERGFNQARLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGRAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=141775 BIS30_RS07350 WP_013308058.1 1371347..1372069(-) (comFC) [Bacillus spizizenii strain T30]
ATGCCAAATGAAGCAGGAGGAGGCATTTATAAACTGATCTGTCTATTATGCGATTCGCCATTTTCTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAAAGATTGCGAAGCATGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATGTGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTTTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTTAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACGGCTCCTGGCAGAATGTTTA
GACCGGCCTATCCACCACCCCCTCATCCGCTTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGTCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCTGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAGAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4A6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904

Multiple sequence alignment