Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BIS30_RS03435 Genome accession   NZ_CP011051
Coordinates   600805..601551 (-) Length   248 a.a.
NCBI ID   WP_003222598.1    Uniprot ID   -
Organism   Bacillus spizizenii strain T30     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 595805..606551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS03410 (BIS30_03410) mreC 596212..597084 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  BIS30_RS03415 (BIS30_03415) mreB 597115..598128 (-) 1014 WP_003222607.1 cell shape-determining protein MreB -
  BIS30_RS03420 (BIS30_03420) radC 598220..598915 (-) 696 WP_003222604.1 DNA repair protein RadC -
  BIS30_RS03425 (BIS30_03425) - 598952..599521 (-) 570 WP_003222602.1 Maf family nucleotide pyrophosphatase -
  BIS30_RS03430 (BIS30_03430) - 599673..600671 (-) 999 WP_003222600.1 SPOR domain-containing protein -
  BIS30_RS03435 (BIS30_03435) comC 600805..601551 (-) 747 WP_003222598.1 A24 family peptidase Machinery gene
  BIS30_RS03440 (BIS30_03440) - 601688..602980 (-) 1293 WP_003222596.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BIS30_RS03445 (BIS30_03445) valS 603041..605683 (-) 2643 WP_003222594.1 valine--tRNA ligase -
  BIS30_RS03450 (BIS30_03450) - 606133..606324 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26645.26 Da        Isoelectric Point: 9.6309

>NTDB_id=141766 BIS30_RS03435 WP_003222598.1 600805..601551(-) (comC) [Bacillus spizizenii strain T30]
MLLILFLLGLILGSFYYTAGCRIPVHISIITPRSACSFCRRTLTAAELIPILSFLFQRGKCKSCGHRISFMYPAAELVTA
CLFAAAEIRFGSSPELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=141766 BIS30_RS03435 WP_003222598.1 600805..601551(-) (comC) [Bacillus spizizenii strain T30]
ATGCTTCTCATTCTTTTTCTCCTCGGGCTGATTCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCGTACATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGTCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAGGGGCAAATGTAAAAGCTGCGGACATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGAAATACGCTTTGGCTCATCTCCGGAACTATTTCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATCTTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGTCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGACCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTGTTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAACTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.532

100

0.915

Multiple sequence alignment