Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BIS30_RS02370 Genome accession   NZ_CP011051
Coordinates   410341..411108 (-) Length   255 a.a.
NCBI ID   WP_003226211.1    Uniprot ID   E0U4P1
Organism   Bacillus spizizenii strain T30     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 405341..416108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BIS30_RS02350 (BIS30_02350) - 405515..406327 (-) 813 WP_003226219.1 pyruvate, water dikinase regulatory protein -
  BIS30_RS02355 (BIS30_02355) ccpN 406353..406991 (-) 639 WP_003226217.1 transcriptional regulator CcpN -
  BIS30_RS02360 (BIS30_02360) glyS 407125..409164 (-) 2040 WP_003226215.1 glycine--tRNA ligase subunit beta -
  BIS30_RS02365 (BIS30_02365) glyQ 409157..410044 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  BIS30_RS02370 (BIS30_02370) recO 410341..411108 (-) 768 WP_003226211.1 DNA repair protein RecO Machinery gene
  BIS30_RS02375 (BIS30_02375) - 411145..411288 (-) 144 WP_003230053.1 YqzL family protein -
  BIS30_RS02380 (BIS30_02380) era 411433..412338 (-) 906 WP_003226207.1 GTPase Era -
  BIS30_RS02385 (BIS30_02385) - 412319..412729 (-) 411 WP_003226204.1 cytidine deaminase -
  BIS30_RS02390 (BIS30_02390) - 412850..413221 (-) 372 WP_003226203.1 diacylglycerol kinase family protein -
  BIS30_RS02395 (BIS30_02395) ybeY 413202..413675 (-) 474 WP_003226199.1 rRNA maturation RNase YbeY -
  BIS30_RS02400 (BIS30_02400) pgpH 413676..415811 (-) 2136 WP_079996420.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29305.97 Da        Isoelectric Point: 8.3072

>NTDB_id=141758 BIS30_RS02370 WP_003226211.1 410341..411108(-) (recO) [Bacillus spizizenii strain T30]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIAQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=141758 BIS30_RS02370 WP_003226211.1 410341..411108(-) (recO) [Bacillus spizizenii strain T30]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACATCAGGCCTTGGAACGCTTCAGCAGGGTGAAATGATCCTCAGTATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAAAGGCACAGAAGAAAAGAAGCC
AAACCCTTATTTGTTTGAATTCATTTTAGAATCATTTAAACAGCTGGATGAAGGAACAGATCCGGATGTCATCACCTTCA
TTGCTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGA
ACCTTTCATTTTTCTGTTCGTGATAACGGTTTTATTTGCCATCGCTGCTTTGAAAAAGACCCTTACAGGGTTCCAATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTATCGAGGCTGGGCAATGTGTCCTTAAAGCAGGAAA
CAAAAGCTGAATTAAAGCAAGTAATTGATTTGTATTATGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTAATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0U4P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

97.255

100

0.973

Multiple sequence alignment