Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | CP48_RS19595 | Genome accession | NZ_CP013662 |
| Coordinates | 3584480..3584956 (+) | Length | 158 a.a. |
| NCBI ID | WP_065225063.1 | Uniprot ID | - |
| Organism | Escherichia coli strain 08-00022 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3579480..3589956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CP48_RS19580 (CP48_18180) | - | 3579895..3582741 (+) | 2847 | WP_065225062.1 | Ag43/Cah family autotransporter adhesin | - |
| CP48_RS19585 (CP48_18185) | - | 3583068..3583886 (+) | 819 | WP_061342098.1 | DUF932 domain-containing protein | - |
| CP48_RS19590 (CP48_18190) | - | 3583979..3584464 (+) | 486 | WP_044311208.1 | antirestriction protein | - |
| CP48_RS19595 (CP48_18195) | radC | 3584480..3584956 (+) | 477 | WP_065225063.1 | RadC family protein | Machinery gene |
| CP48_RS19600 (CP48_18200) | - | 3585025..3585246 (+) | 222 | WP_000692312.1 | DUF987 domain-containing protein | - |
| CP48_RS19605 (CP48_18205) | - | 3585326..3585694 (+) | 369 | WP_063104706.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| CP48_RS19610 (CP48_18210) | - | 3585784..3586161 (+) | 378 | WP_065225064.1 | TA system toxin CbtA family protein | - |
| CP48_RS19615 (CP48_18215) | - | 3586158..3586646 (+) | 489 | WP_000761678.1 | DUF5983 family protein | - |
| CP48_RS19620 (CP48_18220) | - | 3586658..3586855 (+) | 198 | WP_000839239.1 | DUF957 domain-containing protein | - |
| CP48_RS19625 (CP48_18225) | - | 3586940..3587806 (+) | 867 | WP_044311152.1 | DUF4942 domain-containing protein | - |
| CP48_RS19630 (CP48_18230) | - | 3587878..3588141 (+) | 264 | WP_001143297.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| CP48_RS19635 (CP48_18235) | - | 3588138..3588464 (+) | 327 | WP_000779482.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.35 Da Isoelectric Point: 7.2020
>NTDB_id=141685 CP48_RS19595 WP_065225063.1 3584480..3584956(+) (radC) [Escherichia coli strain 08-00022]
MQQISFLPGEMTPGERSLIQRALKILDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL
MQQISFLPGEMTPGERSLIQRALKILDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=141685 CP48_RS19595 WP_065225063.1 3584480..3584956(+) (radC) [Escherichia coli strain 08-00022]
ATGCAACAGATTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAATCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCTGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
ATGCAACAGATTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAATCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCTGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCTCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |