Detailed information NTG0141580

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AUO99_RS11450
• Genome accession: NZ_CP013658
• Coordinates: 2051978..2052970 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain uk_P46212
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2046978..2057970

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AUO99_RS11430 (AUO99_11430)	ygbM	2047616..2048392 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
AUO99_RS11435 (AUO99_11435)	ygbN	2048481..2049845 (+)	1365	WP_000104433.1	GntP family transporter	-
AUO99_RS11440 (AUO99_11440)	-	2049988..2051031 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
AUO99_RS11445 (AUO99_11445)	-	2051256..2051807 (+)	552	WP_001179444.1	flavodoxin family protein	-
AUO99_RS11450 (AUO99_11450)	rpoS	2051978..2052970 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AUO99_RS11455 (AUO99_11455)	nlpD	2053033..2054121 (-)	1089	WP_236922019.1	murein hydrolase activator NlpD	-
AUO99_RS11460 (AUO99_11460)	pcm	2054311..2054937 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AUO99_RS11465 (AUO99_11465)	surE	2054931..2055692 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AUO99_RS11470 (AUO99_11470)	truD	2055673..2056722 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
AUO99_RS11475 (AUO99_11475)	ispF	2056719..2057198 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AUO99_RS11480 (AUO99_11480)	ispD	2057198..2057908 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=141580 AUO99_RS11450 WP_000081550.1 2051978..2052970(-) (rpoS) [Escherichia coli strain uk_P46212]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=141580 AUO99_RS11450 WP_000081550.1 2051978..2052970(-) (rpoS) [Escherichia coli strain uk_P46212]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715