Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AT706_RS18230 Genome accession   NZ_CP013654
Coordinates   3553598..3553828 (-) Length   76 a.a.
NCBI ID   WP_015482693.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3548598..3558828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS18220 (AT706_18225) spoVT 3549323..3549859 (-) 537 WP_003218365.1 stage V sporulation protein T -
  AT706_RS18225 (AT706_18230) mfd 3549995..3553528 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  AT706_RS18230 (AT706_18235) subA/fin 3553598..3553828 (-) 231 WP_015482693.1 anti-sigma-F factor Fin Machinery gene
  AT706_RS18235 (AT706_18240) pth 3553888..3554454 (-) 567 WP_015382565.1 aminoacyl-tRNA hydrolase -
  AT706_RS18240 (AT706_18245) rplYB 3554561..3555175 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  AT706_RS18245 (AT706_18250) prsS 3555261..3556214 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  AT706_RS18250 (AT706_18255) glmU 3556237..3557607 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AT706_RS18260 (AT706_18265) spoVG 3557800..3558093 (-) 294 WP_003218346.1 septation regulator SpoVG -
  AT706_RS18265 (AT706_18270) ridA 3558288..3558665 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8798.74 Da        Isoelectric Point: 5.3895

>NTDB_id=141541 AT706_RS18230 WP_015482693.1 3553598..3553828(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BSD-2]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHENHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=141541 AT706_RS18230 WP_015482693.1 3553598..3553828(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAAAATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

98.684

100

0.987