Detailed information NTG0141535

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: AT706_RS16920
• Genome accession: NZ_CP013654
• Coordinates: 3316884..3318005 (-)
• Length: 373 a.a.
• NCBI ID: WP_015382685.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. subtilis strain BSD-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3311884..3323005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT706_RS16900 (AT706_16905)	znuC	3312393..3313088 (-)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-
AT706_RS16905 (AT706_16910)	znuA	3313143..3314102 (-)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
AT706_RS16910 (AT706_16915)	ycdG	3314290..3315975 (-)	1686	WP_015382687.1	glycoside hydrolase family 13 protein	-
AT706_RS16915 (AT706_16920)	ycdF	3316000..3316776 (-)	777	WP_015382686.1	SDR family oxidoreductase	-
AT706_RS16920 (AT706_16925)	rapF	3316884..3318005 (-)	1122	WP_015382685.1	response regulator aspartate phosphatase RapJ	Regulator
AT706_RS16925 (AT706_16930)	cwlK	3318128..3318640 (+)	513	WP_041517631.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
AT706_RS16930 (AT706_16935)	ycdC	3318648..3320009 (-)	1362	WP_046340299.1	YcdB/YcdC domain-containing protein	-
AT706_RS16935 (AT706_16940)	ycdB	3320196..3321617 (-)	1422	WP_015382683.1	YcdB/YcdC domain-containing protein	-
AT706_RS21375	-	3321791..3321922 (+)	132	WP_003246334.1	hypothetical protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44444.30 Da
• Isoelectric Point: 4.7895

>NTDB_id=141535 AT706_RS16920 WP_015382685.1 3316884..3318005(-) (rapF) [Bacillus subtilis subsp. subtilis strain BSD-2]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSADEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=141535 AT706_RS16920 WP_015382685.1 3316884..3318005(-) (rapF) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGCCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGAGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGATGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (196-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405