Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AT706_RS15605 Genome accession   NZ_CP013654
Coordinates   3041923..3042564 (-) Length   213 a.a.
NCBI ID   WP_015382876.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3036923..3047564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS15590 (AT706_15595) ydfK 3037432..3038121 (+) 690 WP_015382879.1 DUF554 domain-containing protein -
  AT706_RS15595 (AT706_15600) cesA 3038324..3039226 (+) 903 WP_015482865.1 carboxylesterase -
  AT706_RS15600 (AT706_15605) pleJ 3039639..3041810 (-) 2172 WP_015482864.1 MMPL family transporter -
  AT706_RS15605 (AT706_15610) vraR 3041923..3042564 (-) 642 WP_015382876.1 two-component system response regulator YdfI Regulator
  AT706_RS15610 (AT706_15615) ydfH 3042557..3043780 (-) 1224 WP_015482863.1 sensor histidine kinase -
  AT706_RS15615 (AT706_15620) - 3044023..3044172 (+) 150 WP_015382874.1 hypothetical protein -
  AT706_RS21040 - 3044169..3044348 (+) 180 WP_080030634.1 hypothetical protein -
  AT706_RS15620 (AT706_15625) ydfG 3044434..3044877 (+) 444 WP_015482861.1 carboxymuconolactone decarboxylase family protein -
  AT706_RS15625 (AT706_15630) ydfF 3044957..3045637 (-) 681 WP_015482860.1 ArsR/SmtB family transcription factor -
  AT706_RS15630 (AT706_15635) ydfE 3045727..3046350 (+) 624 WP_015482859.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23946.90 Da        Isoelectric Point: 5.4183

>NTDB_id=141522 AT706_RS15605 WP_015382876.1 3041923..3042564(-) (vraR) [Bacillus subtilis subsp. subtilis strain BSD-2]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=141522 AT706_RS15605 WP_015382876.1 3041923..3042564(-) (vraR) [Bacillus subtilis subsp. subtilis strain BSD-2]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAGTTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCTATCAGAGGTAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTTCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371