Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   AT706_RS13200 Genome accession   NZ_CP013654
Coordinates   2574953..2577844 (-) Length   963 a.a.
NCBI ID   WP_080341616.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain BSD-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569953..2582844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT706_RS13165 (AT706_13170) scoC 2570204..2570815 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  AT706_RS13170 (AT706_13175) yhaI 2570812..2571153 (-) 342 WP_009966921.1 YhaI family protein -
  AT706_RS13175 (AT706_13180) yhaJ 2571361..2571879 (+) 519 WP_015483028.1 DUF3267 domain-containing protein -
  AT706_RS20935 - 2571987..2572169 (+) 183 WP_024571667.1 hypothetical protein -
  AT706_RS13180 (AT706_13185) yhzE2 2572222..2572308 (-) 87 WP_003155248.1 sporulation protein YhzE2 -
  AT706_RS20940 yhzE1 2572433..2572519 (-) 87 WP_003327753.1 sporulation protein YhzE1 -
  AT706_RS13185 (AT706_13190) prsA 2572679..2573557 (+) 879 WP_015383240.1 peptidylprolyl isomerase PrsA -
  AT706_RS13190 (AT706_13195) yhaL 2573598..2573810 (-) 213 WP_003233252.1 sporulation protein YhaL -
  AT706_RS13195 (AT706_13200) yhaM 2573935..2574879 (-) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  AT706_RS13200 (AT706_13205) sbcE 2574953..2577844 (-) 2892 WP_080341616.1 DNA repair/recombination ATPase SbcE Machinery gene
  AT706_RS13205 (AT706_13210) yhaO 2577849..2579075 (-) 1227 WP_015383238.1 metallophosphoesterase family protein -
  AT706_RS13210 (AT706_13215) yhaP 2579182..2580441 (-) 1260 WP_015383237.1 ABC transporter permease -
  AT706_RS13215 (AT706_13220) yhaQ 2580434..2581330 (-) 897 WP_015383236.1 ABC transporter ATP-binding protein -
  AT706_RS13220 (AT706_13225) yhzD 2581457..2581642 (+) 186 WP_003233264.1 YhzD family protein -
  AT706_RS13225 (AT706_13230) yhaR 2581663..2582430 (-) 768 WP_015483023.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111229.40 Da        Isoelectric Point: 6.5217

>NTDB_id=141513 AT706_RS13200 WP_080341616.1 2574953..2577844(-) (sbcE) [Bacillus subtilis subsp. subtilis strain BSD-2]
MTALRIISLHIYQYGKFSNRTFRFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGKAEKLSVYTEKGEVKQGDVIKQLFQGTDRSLYKAIYSFDVFGLQEVHAFNRDKIGEFLLFSSLFGAEAVSK
LDTRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAEIELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAECQEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQASAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARHELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQTKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKPSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLEAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIKQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=141513 AT706_RS13200 WP_080341616.1 2574953..2577844(-) (sbcE) [Bacillus subtilis subsp. subtilis strain BSD-2]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCTAATCGGACCTTTCGCTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGTGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGAAAGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTATAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAGTTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATACAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAATCGAATTGAAAGAGACGGCAGGACATATCCGAATGATTGAGGGGGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTAATTGCAGAATGTCAGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGGCGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCATGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAACGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCTGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTCTCG
AAACAGCCGAGAGACAAGACAACCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGAGGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATCA
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGTAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.027

100

0.98

Multiple sequence alignment