Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   VK74_RS07480 Genome accession   NZ_CP011018
Coordinates   1484197..1484826 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CI5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1479197..1489826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VK74_RS07465 (VK74_07465) helD 1479439..1481493 (-) 2055 WP_000420536.1 DNA helicase IV -
  VK74_RS07470 (VK74_07470) yccF 1481616..1482062 (+) 447 WP_001261235.1 YccF domain-containing protein -
  VK74_RS07475 (VK74_07475) yccS 1482072..1484234 (+) 2163 WP_000875019.1 YccS family putative transporter -
  VK74_RS07480 (VK74_07480) sxy/tfoX 1484197..1484826 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  VK74_RS07485 (VK74_07485) sulA 1485045..1485554 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  VK74_RS07495 (VK74_07495) ompA 1485911..1486963 (+) 1053 WP_000750419.1 porin OmpA -
  VK74_RS07500 (VK74_07500) matP 1487038..1487490 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  VK74_RS07505 (VK74_07505) ycbZ 1487676..1489436 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=141498 VK74_RS07480 WP_000839153.1 1484197..1484826(-) (sxy/tfoX) [Escherichia coli strain CI5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=141498 VK74_RS07480 WP_000839153.1 1484197..1484826(-) (sxy/tfoX) [Escherichia coli strain CI5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment