Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   VC76_RS03350 Genome accession   NZ_CP011015
Coordinates   654878..655324 (+) Length   148 a.a.
NCBI ID   WP_002776437.1    Uniprot ID   A0A0Q2LSM9
Organism   Campylobacter coli strain FB1     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649878..660324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VC76_RS03330 (VC76_03340) - 650830..652254 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  VC76_RS03335 (VC76_03345) uvrB 652289..654262 (-) 1974 WP_002844764.1 excinuclease ABC subunit UvrB -
  VC76_RS03340 (VC76_03350) - 654416..654646 (+) 231 WP_002776426.1 hypothetical protein -
  VC76_RS03345 (VC76_03355) - 654636..654881 (+) 246 WP_002776428.1 hypothetical protein -
  VC76_RS03350 (VC76_03360) Cj0683 654878..655324 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  VC76_RS03355 (VC76_03365) - 655321..657159 (+) 1839 WP_002776439.1 primosomal protein N' -
  VC76_RS03360 (VC76_03370) ispG 657219..658292 (+) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  VC76_RS03365 (VC76_03375) flgH 658376..659074 (-) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17302.19 Da        Isoelectric Point: 8.4538

>NTDB_id=141474 VC76_RS03350 WP_002776437.1 654878..655324(+) (Cj0683) [Campylobacter coli strain FB1]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=141474 VC76_RS03350 WP_002776437.1 654878..655324(+) (Cj0683) [Campylobacter coli strain FB1]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAATCAACACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTGCTTCATACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2LSM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.108

100

0.581

Multiple sequence alignment