Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AUC50_RS11385 Genome accession   NZ_CP013621
Coordinates   2263856..2264326 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain RIVM3897     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2258856..2269326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC50_RS11365 (AUC50_11350) coaW 2259167..2259970 (+) 804 WP_000862732.1 type II pantothenate kinase -
  AUC50_RS11370 (AUC50_11355) - 2260100..2260771 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  AUC50_RS11375 (AUC50_11360) ldmS 2261170..2262363 (-) 1194 WP_000183714.1 L-aspartate--L-methionine ligase LdmS -
  AUC50_RS11380 (AUC50_11365) - 2262363..2263547 (-) 1185 WP_001291508.1 M20 family metallopeptidase -
  AUC50_RS11385 (AUC50_11370) luxS 2263856..2264326 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  AUC50_RS11390 (AUC50_11375) - 2264478..2264828 (-) 351 WP_001024035.1 membrane protein -
  AUC50_RS11395 (AUC50_11380) - 2264842..2266143 (-) 1302 WP_001242303.1 pyrimidine-nucleoside phosphorylase -
  AUC50_RS11405 (AUC50_11390) deoC 2266423..2267085 (-) 663 WP_001083328.1 deoxyribose-phosphate aldolase -
  AUC50_RS11410 (AUC50_11395) deoD 2267399..2268109 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  AUC50_RS11415 (AUC50_11400) - 2268230..2268673 (-) 444 WP_000070865.1 Dps family protein -
  AUC50_RS11420 (AUC50_11405) - 2268873..2269286 (-) 414 WP_001123309.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=141401 AUC50_RS11385 WP_000164421.1 2263856..2264326(+) (luxS) [Staphylococcus aureus strain RIVM3897]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=141401 AUC50_RS11385 WP_000164421.1 2263856..2264326(+) (luxS) [Staphylococcus aureus strain RIVM3897]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCAGCTTGTAATGAAGTACAATGTGGCTGGGCAGCTAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404