Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   UP17_RS23305 Genome accession   NZ_CP011008
Coordinates   4959668..4960618 (-) Length   316 a.a.
NCBI ID   WP_061465518.1    Uniprot ID   A0AAW7IC28
Organism   Peribacillus simplex strain SH-B26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4954668..4965618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS23290 (UP17_23280) - 4956817..4957761 (-) 945 WP_208857080.1 siderophore ABC transporter substrate-binding protein -
  UP17_RS23295 (UP17_23285) - 4957976..4958734 (-) 759 WP_061465516.1 ABC transporter ATP-binding protein -
  UP17_RS23300 (UP17_23290) - 4958728..4959675 (-) 948 WP_061465517.1 iron chelate uptake ABC transporter family permease subunit -
  UP17_RS23305 (UP17_23295) ceuB 4959668..4960618 (-) 951 WP_061465518.1 ABC transporter permease Machinery gene
  UP17_RS23310 (UP17_23300) - 4960870..4961211 (+) 342 WP_061465519.1 DUF1450 domain-containing protein -
  UP17_RS23315 (UP17_23305) - 4961577..4963232 (+) 1656 WP_061465520.1 M14 family metallocarboxypeptidase -
  UP17_RS23320 (UP17_23310) shc 4963407..4965302 (+) 1896 WP_349817582.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34960.30 Da        Isoelectric Point: 9.5025

>NTDB_id=141399 UP17_RS23305 WP_061465518.1 4959668..4960618(-) (ceuB) [Peribacillus simplex strain SH-B26]
MKIRYLVMSLIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMMTIIIAGVVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYVSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRIIIYPFEIPIGLVVGVIGSAVFIYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=141399 UP17_RS23305 WP_061465518.1 4959668..4960618(-) (ceuB) [Peribacillus simplex strain SH-B26]
ATGAAGATAAGATATTTAGTCATGTCGTTAATCGTTTTATCATTTACCTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGGATCTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGAATGATGACCATAATCA
TTGCCGGCGTGGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCTACGACTGCC
GGTACCATGGATTCTGCAAGGCTTGGACTTCTTCTTGCCATTATCATTTTTCCATCGGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACATTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATTT
TCATTCCATTGGTTGGTTTGATGTTTGGTAATATCGTCGGTTCCATCTCGACATTCTTTGCTTATAAGTATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGTGATTTCTCGATGATCATGTCGGGAAGGTACGAACTAATATATGTAAGTATCCC
TTTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCTATTAATCTAGGGC
TAAATTATAAACTTATAGTCAATTTTGGGCTGATCATCGTGGCATTATCCTCCACTGTTGTCCTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCAAATATTGTATCCCTTTACCTTGGTGATAATTTGAAAAAGAGTCTTTCTCATAC
AGCGTTGCTAGGGGCAGTATTCCTATTGATCTGCGATATTCTGGGCAGGATCATCATATATCCATTTGAAATTCCGATTG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATAATGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.684

100

0.497

Multiple sequence alignment