Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   UP17_RS16070 Genome accession   NZ_CP011008
Coordinates   3467304..3469019 (-) Length   571 a.a.
NCBI ID   WP_061463991.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3462304..3474019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS16050 (UP17_16035) - 3463169..3463903 (-) 735 WP_061463987.1 glycerophosphodiester phosphodiesterase -
  UP17_RS16060 (UP17_16045) spo0A 3464737..3465528 (-) 792 WP_061463989.1 sporulation transcription factor Spo0A -
  UP17_RS16065 (UP17_16050) spoIVB 3465848..3467140 (-) 1293 WP_061463990.1 SpoIVB peptidase -
  UP17_RS16070 (UP17_16055) recN 3467304..3469019 (-) 1716 WP_061463991.1 DNA repair protein RecN Machinery gene
  UP17_RS16075 (UP17_16060) argR 3469042..3469491 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  UP17_RS16080 (UP17_16065) - 3469819..3470646 (-) 828 WP_061463992.1 TlyA family RNA methyltransferase -
  UP17_RS16085 (UP17_16070) dxs 3470651..3472543 (-) 1893 WP_061466140.1 1-deoxy-D-xylulose-5-phosphate synthase -
  UP17_RS16090 (UP17_16075) - 3472794..3473687 (-) 894 WP_061463993.1 polyprenyl synthetase family protein -
  UP17_RS16095 (UP17_16080) - 3473689..3473922 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64429.30 Da        Isoelectric Point: 5.1496

>NTDB_id=141381 UP17_RS16070 WP_061463991.1 3467304..3469019(-) (recN) [Peribacillus simplex strain SH-B26]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTIAILREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNSLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDFDTERVEFIESRLNEINQLKRKYGRS
IEEILEYGAGIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSDLRQTFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=141381 UP17_RS16070 WP_061463991.1 3467304..3469019(-) (recN) [Peribacillus simplex strain SH-B26]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACTGTCTT
GACCGGAGAAACAGGGGCAGGGAAATCAATTATTATAGATGCCGTTCACCTTTTGGTTGGAGGACGTGGTTCTGCCGAGT
TCATACGGCATGGTGAGTCGAAGGCCGAAATAGAAGGATTATTTCAAATTGAAGATGAGAAACACCCGGTCTTTGCCAAG
GCAGAAGAGTTTGGCCTGGATATGAATGACGGTATGGCCATTCTTCGTAGGGATATTTCACAGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAACTTGTAACGATTGCCATTTTACGCGAGATAGGACGGACATTGATAGATATTCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGGCTCCACCTTCCTCTGCTGGATCAATTCGGCGGAGAAAAAATCGCATCGGCACTC
ACGGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTAAATAGTTTGAGTCAAAATGAACAGCAAAT
GGTCCATCGCCTTGACTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAACTTCGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTCGAAAAAATTCATGAAGCGCTGCAAACGAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAACCTGGAAGAGGCGGCAGGGCTTGATGAAGGTTTAAAAAA
CAGCTCCGAGACCGTATCAAATAGTTACTTCCTTCTTGAAGAGGCCGTATCGAACATCCGAGATCAATTGGACTCTTTGG
ATTTTGATACAGAACGTGTTGAATTCATTGAAAGTCGCCTAAATGAAATAAATCAATTAAAACGTAAATACGGGCGGTCC
ATCGAGGAAATCCTGGAATATGGTGCAGGCATAGAAGAAGAAGTCGAAAAACTGCAAAATAGGGAAACACACATAGCAAA
GCTTGAAAAGGAAATGAAATCAATAAAGGCTGATTTAATTGTTGAAGCAAAGAATTTGTCTGATCTTCGTCAGACATTCG
CTCAGCAGTTAACCAAAAAGATCCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCCCATTTCCTT
CAAACGGCTTATACTTTCGATGAGTTATCAGATAGGGGCATTAATCAATCGGGGCTGGATTCGATGGAATTTTATATTTC
CACCAATCCGGGGGAACCGTTAAAACCCCTTTCTAAAATTGCATCGGGTGGAGAGCTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTTTCCAAGCACCAAGGCATAACGTCGATTATATTTGATGAAGTGGACACGGGTGTGAGCGGACGGGTTGCA
CAATCGATTGCTGAAAAGATCTATAAAGTGGCAACGGGGTCTCAAGTGCTGTGCATATCCCATTTACCACAGGTGGCAGC
TATGGCGGATACCCACCTTTTCATAGCGAAAAATGTAAGGGCTGGACGTACGAATACCTCTGTAAAGCCTCTAATTGAAA
CTGAAAAAATAAAAGAAATCGGCAGGATGATTTCAGGAGTCGAGATTACGGATTTGACGAAGCAGCATGCCAATGAATTA
ATTCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.616

Multiple sequence alignment