Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   UP17_RS06010 Genome accession   NZ_CP011008
Coordinates   1278412..1280229 (+) Length   605 a.a.
NCBI ID   WP_061462104.1    Uniprot ID   -
Organism   Peribacillus simplex strain SH-B26     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1273412..1285229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP17_RS05990 (UP17_06000) spxA 1273770..1274165 (+) 396 WP_061462100.1 transcriptional regulator SpxA -
  UP17_RS05995 (UP17_06005) mecA 1274633..1275301 (+) 669 WP_061462101.1 adaptor protein MecA -
  UP17_RS06000 (UP17_06010) cls 1275416..1276924 (+) 1509 WP_061462102.1 cardiolipin synthase -
  UP17_RS06005 (UP17_06015) - 1277022..1278233 (+) 1212 WP_061462103.1 competence protein CoiA family protein -
  UP17_RS06010 (UP17_06020) pepF 1278412..1280229 (+) 1818 WP_061462104.1 oligoendopeptidase F Regulator
  UP17_RS06015 (UP17_06030) - 1281651..1282514 (-) 864 WP_061466001.1 ClpXP adapter SpxH family protein -
  UP17_RS06020 (UP17_06035) - 1282538..1282939 (-) 402 WP_089363690.1 globin -
  UP17_RS29185 (UP17_06040) - 1283176..1283826 (-) 651 WP_061462106.1 lytic transglycosylase domain-containing protein -
  UP17_RS06030 (UP17_06045) - 1283859..1284437 (-) 579 WP_061462107.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69667.12 Da        Isoelectric Point: 4.7162

>NTDB_id=141373 UP17_RS06010 WP_061462104.1 1278412..1280229(+) (pepF) [Peribacillus simplex strain SH-B26]
MAQETKVNALPSRSEIAAEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEGHKGTLGESAEKLFSALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDEGKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSSNNIPETVYDNLVKTVNDSLPLLHRYLDLRKKVLGLEELHMYDLFTPLVKEVKM
EVTYEEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNKIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHSIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=141373 UP17_RS06010 WP_061462104.1 1278412..1280229(+) (pepF) [Peribacillus simplex strain SH-B26]
ATGGCACAAGAAACAAAAGTGAATGCATTACCCTCAAGAAGTGAAATAGCTGCGGAAGATACATGGAGACTGGAAGATAT
CTTCGCCACCGAAGAAGATTGGGAAGCTGCTTTCAAAGCAGTAAAAGAAGATCTCAAGAAAGCGGAGGGACATAAAGGGA
CTTTGGGCGAAAGCGCAGAAAAGTTATTTTCGGCTCTTCAACTCCAAGATGAAGTATTTGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGACCAAGATACAACCAATCCTTTTTATCAAGGGATGGAAGATCGGGCAAAAGCTTTATA
CGCCCAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAGCTATTGAGTATTGACGAAGGCAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCATTAGAGGAAATCAATCTTCAGAGACCCCATATCCTATCTGCCGAG
CAGGAAGAATTATTGGCACAAGCTTCAGAAGTACTCGATGCATCAGGCAATACTTTCGGTATGCTTAACAATGCTGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATAACTCATGGAAGGTATATCAGTTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGTGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCATAATTTCAATGCCACAGTCCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGCAG
CAATAACATTCCGGAGACAGTATACGATAATCTCGTTAAAACAGTCAATGACAGCTTGCCGTTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTAGGATTGGAAGAACTTCATATGTATGATCTATTCACTCCGCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGAGGAGGCCAAAGATTATGTCCTAAAGGGGCTTGCTCCGCTTGGGGAGGACTATTTGAATGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCTTCTGGTACATACG
GGACGAATCCATATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTCGGGCATTCG
GTCCATAGCTACTATACGCGTAAATATCAGCCTTACCCATACGGTAATTATTCTATATTCGTAGCGGAAGTTGCCTCGAC
TTGTAATGAAAACCTGCTGAATGATTACTTACTAAATAAAATCGAGGATGAAAAGAAGCGCATCTATTTATTGAATCATT
ATCTAGAAGGTTTCCGTGGAACATTGTTCCGCCAAACGATGTTTGCGGAGTTTGAACATTCCATACATTTAAAAGCTCAA
AATGGGGAAGCGTTGACAGCCGATATGTTAACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGTGAGAATGTGAC
AATTGATGAAGAAATCGGTTTGGAATGGGCACGTATTCCACATTTCTACTATAATTACTATGTTTATCAATATGCGACTG
GAATAAGTGCAGCAACAGCATTAAGCAAGCAAATCCTTGAAGAAGGAGAGCCCGCTGTCAAAAGGTATCTGGAGTTCCTG
AAATCAGGAAGTTCTGATTATCCGATTGAAGTACTAAAAAAGGCAGGGGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAGAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498

Multiple sequence alignment