Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   UP12_RS11460 Genome accession   NZ_CP011007
Coordinates   2293590..2294360 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2288590..2299360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS11440 (UP12_11445) - 2288684..2289505 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  UP12_RS11445 (UP12_11450) - 2289531..2290169 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  UP12_RS11450 (UP12_11455) glyS 2290337..2292382 (-) 2046 WP_061408612.1 glycine--tRNA ligase subunit beta -
  UP12_RS11455 (UP12_11460) glyQ 2292375..2293262 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  UP12_RS11460 (UP12_11465) recO 2293590..2294360 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  UP12_RS19910 - 2294396..2294539 (-) 144 WP_003217288.1 YqzL family protein -
  UP12_RS11465 (UP12_11470) era 2294688..2295593 (-) 906 WP_058014648.1 GTPase Era -
  UP12_RS11470 (UP12_11475) - 2295586..2295984 (-) 399 WP_003217296.1 cytidine deaminase -
  UP12_RS11475 (UP12_11480) - 2296098..2296484 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  UP12_RS11480 (UP12_11485) ybeY 2296462..2296941 (-) 480 WP_061408615.1 rRNA maturation RNase YbeY -
  UP12_RS11485 (UP12_11490) - 2296942..2299029 (-) 2088 WP_049754949.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=141336 UP12_RS11460 WP_034661344.1 2293590..2294360(-) (recO) [Bacillus pumilus strain SH-B9]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=141336 UP12_RS11460 WP_034661344.1 2293590..2294360(-) (recO) [Bacillus pumilus strain SH-B9]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCGAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTCTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
CCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTGGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment