Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | UP12_RS11130 | Genome accession | NZ_CP011007 |
| Coordinates | 2236856..2237191 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain SH-B9 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2231856..2242191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UP12_RS11115 (UP12_11115) | gcvT | 2232334..2233431 (-) | 1098 | WP_061408547.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| UP12_RS11120 (UP12_11120) | - | 2233993..2235663 (+) | 1671 | WP_061408550.1 | SNF2-related protein | - |
| UP12_RS11125 (UP12_11125) | - | 2235678..2236475 (+) | 798 | WP_058014689.1 | YqhG family protein | - |
| UP12_RS19900 | - | 2236658..2236822 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| UP12_RS11130 (UP12_11130) | sinR | 2236856..2237191 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| UP12_RS11135 (UP12_11135) | - | 2237259..2238059 (-) | 801 | WP_058014688.1 | TasA family protein | - |
| UP12_RS11140 (UP12_11140) | - | 2238117..2238689 (-) | 573 | WP_058014687.1 | signal peptidase I | - |
| UP12_RS11145 (UP12_11145) | tapA | 2238734..2239261 (-) | 528 | WP_058014686.1 | amyloid fiber anchoring/assembly protein TapA | - |
| UP12_RS11150 (UP12_11150) | - | 2239528..2239839 (+) | 312 | WP_061410249.1 | YqzG/YhdC family protein | - |
| UP12_RS11155 (UP12_11155) | - | 2239873..2240067 (-) | 195 | WP_044140973.1 | YqzE family protein | - |
| UP12_RS11160 (UP12_11160) | comGG | 2240127..2240510 (-) | 384 | WP_058014684.1 | competence type IV pilus minor pilin ComGG | - |
| UP12_RS11165 (UP12_11165) | comGF | 2240507..2241007 (-) | 501 | WP_061408553.1 | competence type IV pilus minor pilin ComGF | - |
| UP12_RS11170 (UP12_11170) | comGE | 2240946..2241263 (-) | 318 | WP_058014682.1 | competence type IV pilus minor pilin ComGE | - |
| UP12_RS11175 (UP12_11175) | comGD | 2241247..2241693 (-) | 447 | WP_061408555.1 | competence type IV pilus minor pilin ComGD | - |
| UP12_RS11180 (UP12_11180) | comGC | 2241686..2241979 (-) | 294 | WP_003217322.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=141333 UP12_RS11130 WP_012010555.1 2236856..2237191(+) (sinR) [Bacillus pumilus strain SH-B9]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=141333 UP12_RS11130 WP_012010555.1 2236856..2237191(+) (sinR) [Bacillus pumilus strain SH-B9]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |