Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   UP12_RS10005 Genome accession   NZ_CP011007
Coordinates   2030330..2030941 (+) Length   203 a.a.
NCBI ID   WP_058014838.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2025330..2035941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS09965 (UP12_09965) - 2025498..2026616 (+) 1119 WP_244270807.1 NADH-dependent flavin oxidoreductase -
  UP12_RS09970 (UP12_09970) - 2026667..2027173 (-) 507 WP_061408324.1 PTS glucose transporter subunit IIA -
  UP12_RS09975 (UP12_09975) - 2027341..2027760 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  UP12_RS09980 (UP12_09980) - 2027781..2028233 (-) 453 WP_058014840.1 YppG family protein -
  UP12_RS09985 (UP12_09985) - 2028340..2028711 (-) 372 WP_044141136.1 YppE family protein -
  UP12_RS09990 (UP12_09990) - 2028769..2029002 (-) 234 WP_223251159.1 DUF5446 family protein -
  UP12_RS09995 (UP12_09995) sspM 2029199..2029303 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  UP12_RS10000 (UP12_10000) - 2029327..2030283 (-) 957 WP_058014839.1 DUF2515 domain-containing protein -
  UP12_RS10005 (UP12_10005) recU 2030330..2030941 (+) 612 WP_058014838.1 Holliday junction resolvase RecU Machinery gene
  UP12_RS10010 (UP12_10010) - 2030985..2033699 (+) 2715 WP_058014837.1 PBP1A family penicillin-binding protein -
  UP12_RS10015 (UP12_10015) - 2033734..2034243 (-) 510 WP_058014836.1 YpoC family protein -
  UP12_RS10020 (UP12_10020) nth 2034240..2034902 (-) 663 WP_012010351.1 endonuclease III -
  UP12_RS10025 (UP12_10025) - 2034920..2035624 (-) 705 WP_061408326.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23270.40 Da        Isoelectric Point: 8.9930

>NTDB_id=141330 UP12_RS10005 WP_058014838.1 2030330..2030941(+) (recU) [Bacillus pumilus strain SH-B9]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELVEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=141330 UP12_RS10005 WP_058014838.1 2030330..2030941(+) (recU) [Bacillus pumilus strain SH-B9]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAC
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTTTGGGAGCGGCAGAAG
CTAAACGGCCGAAAATCCATTAGTAAAGACGAATTAGTGGAAGCAGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment