Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   UP12_RS07000 Genome accession   NZ_CP011007
Coordinates   1429280..1429558 (+) Length   92 a.a.
NCBI ID   WP_012009813.1    Uniprot ID   A8FCR0
Organism   Bacillus pumilus strain SH-B9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424280..1434558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS06980 (UP12_06985) - 1424372..1424647 (-) 276 WP_034619939.1 hypothetical protein -
  UP12_RS06985 (UP12_06990) - 1424791..1426410 (+) 1620 WP_003212114.1 ATP-binding cassette domain-containing protein -
  UP12_RS06990 (UP12_06995) - 1426449..1427681 (-) 1233 WP_061407652.1 aminopeptidase -
  UP12_RS20180 - 1427790..1427921 (-) 132 WP_003210922.1 protein YkpC -
  UP12_RS06995 (UP12_07000) mreBH 1427996..1429003 (-) 1008 WP_012009812.1 rod-share determining protein MreBH -
  UP12_RS07000 (UP12_07005) abrB 1429280..1429558 (+) 279 WP_012009813.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  UP12_RS07005 (UP12_07010) - 1429701..1431011 (+) 1311 WP_061407655.1 ATP-binding protein -
  UP12_RS07010 (UP12_07015) - 1431016..1431852 (+) 837 WP_061407658.1 gamma-glutamylcyclotransferase family protein -
  UP12_RS07015 (UP12_07020) - 1431890..1432558 (+) 669 WP_012009816.1 TrkA family potassium uptake protein -
  UP12_RS07020 (UP12_07025) ade 1432820..1434550 (+) 1731 WP_061407661.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10291.94 Da        Isoelectric Point: 4.5216

>NTDB_id=141324 UP12_RS07000 WP_012009813.1 1429280..1429558(+) (abrB) [Bacillus pumilus strain SH-B9]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=141324 UP12_RS07000 WP_012009813.1 1429280..1429558(+) (abrB) [Bacillus pumilus strain SH-B9]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCTATTAAAGACAGTATGGAATTTTTTATAGATGGGGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
TTACTGTTAAAAGAACTTCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment