Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   UP12_RS06895 Genome accession   NZ_CP011007
Coordinates   1409300..1409881 (+) Length   193 a.a.
NCBI ID   WP_044142051.1    Uniprot ID   A0AB34QPU5
Organism   Bacillus pumilus strain SH-B9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404300..1414881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS06865 (UP12_06870) dapD 1404423..1405133 (+) 711 WP_058014112.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  UP12_RS06870 (UP12_06875) - 1405215..1406345 (+) 1131 WP_061407611.1 N-acetyldiaminopimelate deacetylase -
  UP12_RS06875 (UP12_06880) - 1406396..1406638 (+) 243 WP_003211408.1 YkuS family protein -
  UP12_RS06880 (UP12_06885) - 1406668..1407474 (-) 807 WP_061407614.1 mechanosensitive ion channel family protein -
  UP12_RS06885 (UP12_06890) ahpA 1407746..1408288 (+) 543 WP_060699232.1 biofilm-specific peroxidase AhpA -
  UP12_RS06890 (UP12_06895) - 1408371..1408829 (+) 459 WP_061407617.1 TlpA disulfide reductase family protein -
  UP12_RS06895 (UP12_06900) rok 1409300..1409881 (+) 582 WP_044142051.1 transcriptional regulator Rok Regulator
  UP12_RS06900 (UP12_06905) - 1409932..1410849 (-) 918 WP_058014106.1 hypothetical protein -
  UP12_RS06905 (UP12_06910) - 1410935..1411516 (+) 582 WP_061407620.1 molybdenum cofactor guanylyltransferase -
  UP12_RS06910 (UP12_06915) - 1411546..1412562 (+) 1017 WP_061407623.1 thiazole biosynthesis adenylyltransferase ThiF -
  UP12_RS06915 (UP12_06920) glp 1412572..1413849 (+) 1278 WP_061407625.1 gephyrin-like molybdotransferase Glp -
  UP12_RS06920 (UP12_06925) mobB 1413831..1414355 (+) 525 WP_058014102.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  UP12_RS06925 (UP12_06930) - 1414379..1414843 (+) 465 WP_180310807.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21788.74 Da        Isoelectric Point: 9.7309

>NTDB_id=141323 UP12_RS06895 WP_044142051.1 1409300..1409881(+) (rok) [Bacillus pumilus strain SH-B9]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=141323 UP12_RS06895 WP_044142051.1 1409300..1409881(+) (rok) [Bacillus pumilus strain SH-B9]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AGGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment