Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   UP12_RS06775 Genome accession   NZ_CP011007
Coordinates   1390913..1391374 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain SH-B9     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385913..1396374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS06755 (UP12_06760) - 1386521..1387405 (+) 885 WP_061407593.1 cation diffusion facilitator family transporter -
  UP12_RS20175 - 1387468..1387620 (-) 153 WP_162839369.1 hypothetical protein -
  UP12_RS06760 (UP12_06765) - 1387922..1388461 (+) 540 WP_058014124.1 RDD family protein -
  UP12_RS06765 (UP12_06770) - 1388587..1389897 (+) 1311 WP_061407596.1 MFS transporter -
  UP12_RS06770 (UP12_06775) - 1389971..1390879 (+) 909 WP_012009773.1 chemotaxis protein -
  UP12_RS06775 (UP12_06780) kre 1390913..1391374 (-) 462 WP_012009774.1 YkyB family protein Regulator
  UP12_RS06780 (UP12_06785) - 1391884..1392099 (-) 216 WP_012009775.1 hypothetical protein -
  UP12_RS06785 (UP12_06790) - 1392267..1392485 (+) 219 WP_058014122.1 hypothetical protein -
  UP12_RS06790 (UP12_06795) - 1392508..1393785 (-) 1278 WP_058014121.1 MFS transporter -
  UP12_RS06795 (UP12_06800) - 1393859..1394356 (-) 498 WP_058014120.1 L,D-transpeptidase family protein -
  UP12_RS06800 (UP12_06805) - 1394513..1395370 (-) 858 WP_061407599.1 metallophosphoesterase -
  UP12_RS06805 (UP12_06810) fadH 1395508..1396272 (+) 765 WP_058014118.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=141322 UP12_RS06775 WP_012009774.1 1390913..1391374(-) (kre) [Bacillus pumilus strain SH-B9]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=141322 UP12_RS06775 WP_012009774.1 1390913..1391374(-) (kre) [Bacillus pumilus strain SH-B9]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGTGCAAAGCAGCTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment