Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | UP12_RS05240 | Genome accession | NZ_CP011007 |
| Coordinates | 1086458..1087036 (+) | Length | 192 a.a. |
| NCBI ID | WP_044140707.1 | Uniprot ID | A0AB34QUR0 |
| Organism | Bacillus pumilus strain SH-B9 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1081458..1092036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UP12_RS05220 (UP12_05220) | - | 1081950..1083245 (-) | 1296 | WP_058014375.1 | globin-coupled sensor protein | - |
| UP12_RS05225 (UP12_05225) | - | 1083337..1084869 (-) | 1533 | WP_061407275.1 | FAD-dependent oxidoreductase | - |
| UP12_RS05230 (UP12_05230) | - | 1085015..1085875 (+) | 861 | WP_058014373.1 | SDR family oxidoreductase | - |
| UP12_RS05235 (UP12_05235) | - | 1085938..1086168 (-) | 231 | WP_003210924.1 | IDEAL domain-containing protein | - |
| UP12_RS05240 (UP12_05240) | comK | 1086458..1087036 (+) | 579 | WP_044140707.1 | competence protein ComK | Regulator |
| UP12_RS05245 (UP12_05245) | - | 1087195..1088301 (+) | 1107 | WP_058014497.1 | D-TA family PLP-dependent enzyme | - |
| UP12_RS05250 (UP12_05250) | - | 1088619..1089101 (+) | 483 | WP_061407278.1 | hypothetical protein | - |
| UP12_RS05255 (UP12_05255) | - | 1089133..1090572 (-) | 1440 | WP_061407280.1 | PLP-dependent aminotransferase family protein | - |
| UP12_RS05260 (UP12_05260) | - | 1090717..1091883 (+) | 1167 | WP_058014370.1 | MFS transporter | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22362.42 Da Isoelectric Point: 8.7996
>NTDB_id=141311 UP12_RS05240 WP_044140707.1 1086458..1087036(+) (comK) [Bacillus pumilus strain SH-B9]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVIFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=141311 UP12_RS05240 WP_044140707.1 1086458..1087036(+) (comK) [Bacillus pumilus strain SH-B9]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCTCATAAGCCTCCC
ATTGTAATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCTTTTGAGAGTCAGGTACACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTACGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATATCTCATAAGCCTCCC
ATTGTAATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAGGAATCATCCCTCGGAGACACGGTGGTCATCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAATCTTTTGAGAGTCAGGTACACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTACGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
61.458 |
100 |
0.615 |