Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   UP12_RS00255 Genome accession   NZ_CP011007
Coordinates   47044..47334 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42044..52334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS00215 (UP12_00210) - 42079..42408 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  UP12_RS00220 (UP12_00215) - 42421..42861 (+) 441 WP_058015827.1 DUF327 family protein -
  UP12_RS00225 (UP12_00220) holB 42873..43862 (+) 990 WP_058015828.1 DNA polymerase III subunit delta' -
  UP12_RS00230 (UP12_00225) - 43865..44692 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  UP12_RS00235 (UP12_00230) yabA 44707..45060 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  UP12_RS00240 (UP12_00235) - 45116..45859 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  UP12_RS00245 (UP12_00240) - 45846..46142 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  UP12_RS00250 (UP12_00245) rsmI 46120..46998 (+) 879 WP_061406483.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  UP12_RS00255 (UP12_00250) abrB 47044..47334 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  UP12_RS00260 (UP12_00255) metG 47855..49846 (+) 1992 WP_061406486.1 methionine--tRNA ligase -
  UP12_RS00265 (UP12_00260) - 49928..50695 (+) 768 WP_050945797.1 TatD family hydrolase -
  UP12_RS00270 (UP12_00265) - 50940..52142 (+) 1203 WP_061406488.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=141302 UP12_RS00255 WP_087975202.1 47044..47334(-) (abrB) [Bacillus pumilus strain SH-B9]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=141302 UP12_RS00255 WP_087975202.1 47044..47334(-) (abrB) [Bacillus pumilus strain SH-B9]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment