Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   MNA02_RS02180 Genome accession   NZ_CP010999
Coordinates   395657..396100 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A02     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 390657..401100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNA02_RS02160 (MNA02_407) - 391181..391933 (-) 753 WP_024704202.1 NUDIX domain-containing protein -
  MNA02_RS02165 (MNA02_408) - 391997..393103 (-) 1107 WP_024009756.1 AAA family ATPase -
  MNA02_RS02170 (MNA02_409) gdhA 393447..394799 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  MNA02_RS02175 (MNA02_410) - 395057..395467 (+) 411 WP_011680804.1 peptide deformylase -
  MNA02_RS02180 (MNA02_411) rcrR 395657..396100 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  MNA02_RS02185 (MNA02_412) rcrP 396104..397918 (+) 1815 WP_024704204.1 ABC transporter ATP-binding protein Regulator
  MNA02_RS02190 (MNA02_413) rcrQ 397908..399686 (+) 1779 WP_024704205.1 ABC transporter ATP-binding protein Regulator
  MNA02_RS02195 (MNA02_414) - 399842..400099 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=141212 MNA02_RS02180 WP_002945408.1 395657..396100(+) (rcrR) [Streptococcus thermophilus strain MN-BM-A02]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=141212 MNA02_RS02180 WP_002945408.1 395657..396100(+) (rcrR) [Streptococcus thermophilus strain MN-BM-A02]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537

Multiple sequence alignment