Detailed information NTG0141037

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NHmuc_RS21230
• Genome accession: NZ_CP013479
• Coordinates: 4470377..4471381 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain NHmuc
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4465377..4476381

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHmuc_RS21210 (NHmuc_4182)	-	4465861..4466868 (+)	1008	WP_003098486.1	TolB family protein	-
NHmuc_RS21220 (NHmuc_4183)	mutS	4466994..4469561 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
NHmuc_RS21225 (NHmuc_4184)	fdxA	4469628..4469951 (+)	324	WP_003092272.1	ferredoxin FdxA	-
NHmuc_RS21230 (NHmuc_4186)	rpoS	4470377..4471381 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
NHmuc_RS21235 (NHmuc_4187)	-	4471486..4472379 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
NHmuc_RS21240 (NHmuc_4188)	-	4472425..4473060 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NHmuc_RS21245 (NHmuc_4189)	surE	4473093..4473842 (-)	750	WP_004345454.1	5'/3'-nucleotidase SurE	-
NHmuc_RS21250 (NHmuc_4190)	truD	4473830..4474897 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
NHmuc_RS21255 (NHmuc_4191)	ispF	4474894..4475367 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NHmuc_RS21260 (NHmuc_4192)	fghA	4475438..4476289 (-)	852	WP_004345459.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=141037 NHmuc_RS21230 WP_003113871.1 4470377..4471381(-) (rpoS) [Pseudomonas aeruginosa strain NHmuc]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=141037 NHmuc_RS21230 WP_003113871.1 4470377..4471381(-) (rpoS) [Pseudomonas aeruginosa strain NHmuc]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653